Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p52480 Brassica napus HOM05D002293 ORTHO05D006850 2.8e-82 308.5 151 100.0
BolC7t43630H Brassica oleracea HOM05D002293 ORTHO05D006850 8.1e-82 307.0 151 99.3
BcaC06g34278 Brassica carinata HOM05D002294 ORTHO05D002367 3.0e-68 261.9 133 97.7
C08p13740 Brassica napus HOM05D002293 ORTHO05D006850 1.3e-58 229.9 135 88.9
BolC8t49009H Brassica oleracea HOM05D002293 ORTHO05D006850 1.6e-58 229.6 135 88.9
A08p33930 Brassica napus HOM05D002293 ORTHO05D006850 4.8e-58 228.0 135 89.6
BraA08t35307Z Brassica rapa HOM05D002293 ORTHO05D006850 4.8e-58 228.0 135 89.6
BcaC07g38568 Brassica carinata HOM05D002293 ORTHO05D006850 6.2e-58 227.6 134 88.8
BcaC07g38606 Brassica carinata HOM05D002293 ORTHO05D006850 4.2e-54 214.9 135 84.4
Sp1g09130 Schrenkiella parvula HOM05D002293 ORTHO05D006850 7.1e-54 214.2 134 83.6
A06p07270 Brassica napus HOM05D002293 ORTHO05D006850 3.5e-53 211.8 136 83.8
BraA06t23933Z Brassica rapa HOM05D002293 ORTHO05D006850 3.5e-53 211.8 136 83.8
Thhalv10008651m.g Eutrema salsugineum HOM05D002293 ORTHO05D006850 1.0e-52 210.3 135 81.5
C05p08790 Brassica napus HOM05D002293 ORTHO05D006850 1.3e-52 209.9 136 82.4
BolC5t29625H Brassica oleracea HOM05D002293 ORTHO05D006850 3.9e-52 208.4 137 81.0
BcaC05g24873 Brassica carinata HOM05D002293 ORTHO05D006850 1.1e-51 206.8 137 80.3
BcaC05g24931 Brassica carinata HOM05D002293 ORTHO05D006850 2.8e-50 202.2 136 80.9
BraA05t22726Z Brassica rapa HOM05D002293 ORTHO05D006850 8.1e-50 200.7 150 73.3
BolC5t29624H Brassica oleracea HOM05D002293 ORTHO05D006850 4.0e-49 198.4 128 82.0
CARHR010640 Cardamine hirsuta HOM05D002293 ORTHO05D006850 3.4e-48 195.3 136 74.3
Aa31LG1G4450 Aethionema arabicum HOM05D002293 ORTHO05D006850 8.4e-47 190.7 135 73.3
Carub.0001s0993 Capsella rubella HOM05D002293 ORTHO05D006850 1.2e-45 186.8 138 73.2
AL1G21300 Arabidopsis lyrata HOM05D002293 ORTHO05D006850 4.6e-45 184.9 140 73.6
AT1G10500 Arabidopsis thaliana HOM05D002293 ORTHO05D006850 6.7e-44 181.0 139 72.7
THA.LOC104823665 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 1.6e-34 149.8 134 63.4
CARHR053060 Cardamine hirsuta HOM05D002293 ORTHO05D006850 3.7e-34 148.7 135 60.0
Manes.13G076424 Manihot esculenta HOM05D002293 ORTHO05D006850 4.1e-33 145.2 132 62.9
TWI75G0731 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 4.1e-33 145.2 120 65.8
TWI79G1666 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 1.5e-32 143.3 149 56.4
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.4e-32 142.1 137 59.9
Prupe.6G169400 Prunus persica HOM05D002293 ORTHO05D006850 3.4e-32 142.1 135 62.2
THA.LOC104816734 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 3.4e-32 142.1 135 58.5
Ciclev10026609m.g Citrus clementina HOM05D002293 ORTHO05D006850 1.3e-31 140.2 137 59.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.2e-31 139.4 105 71.4
MD15G1331200 Malus domestica HOM05D002293 ORTHO05D006850 2.9e-31 139.0 135 57.8
Aqoxy6G00443 Aquilegia oxysepala HOM05D002293 ORTHO05D006850 3.8e-31 138.7 129 60.5
CANSAT01G3021 Cannabis sativa HOM05D002293 ORTHO05D006850 3.8e-31 138.7 136 58.1
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.8e-31 138.7 138 58.7
FvH4_1g22881 Fragaria vesca HOM05D002293 ORTHO05D006850 6.5e-31 137.9 139 59.7
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.5e-31 137.9 137 57.7
TAR628G0759 Trochodendron aralioides HOM05D002293 ORTHO05D006850 6.5e-31 137.9 111 65.8
ClCG01G015990 Citrullus lanatus HOM05D002293 ORTHO05D006850 8.5e-31 137.5 135 58.5
arahy.Tifrunner.gnm1.ann1.U9B4SP Arachis hypogaea HOM05D000087 ORTHO05D000439 1.4e-30 136.7 134 57.5
Dinv19472 Davidia involucrata HOM05D002293 ORTHO05D006850 1.4e-30 136.7 116 63.8
A05p39450 Brassica napus HOM05D002293 ORTHO05D006850 2.5e-30 136.0 68 95.6
Atru.chr4.430 Acer truncatum HOM05D002293 ORTHO05D006850 1.6e-29 133.3 138 58.7
MELO3C007469.2 Cucumis melo HOM05D002293 ORTHO05D006850 1.6e-29 133.3 135 57.8
CiPaw.04G090700 Carya illinoinensis HOM05D002293 ORTHO05D006850 2.1e-29 132.9 135 57.0
Potri.005G085400 Populus trichocarpa HOM05D002293 ORTHO05D006850 3.6e-29 132.1 118 63.6
Lsat_1_v5_gn_5_39360 Lactuca sativa HOM05D002293 ORTHO05D006850 4.6e-29 131.7 131 56.5
QL06p031806 Quercus lobata HOM05D002293 ORTHO05D006850 4.6e-29 131.7 151 51.7
RcHm_v2.0_Chr2g0117221 Rosa chinensis HOM05D002293 ORTHO05D006850 6.1e-29 131.3 135 57.0
CsaV3_6G042270 Cucumis sativus L. HOM05D002293 ORTHO05D006850 7.9e-29 131.0 108 64.8
Rhsim08G0005400 Rhododendron simsii HOM05D002293 ORTHO05D006850 7.9e-29 131.0 116 60.3
COL.COLO4_10996 Corchorus olitorius HOM05D002293 ORTHO05D006850 1.0e-28 130.6 135 56.3
PSO675G5492 Papaver somniferum HOM05D002293 ORTHO05D006850 1.0e-28 130.6 130 57.7
Phvul.002G265600 Phaseolus vulgaris HOM05D002293 ORTHO05D006850 1.4e-28 130.2 136 55.1
CiPaw.03G133300 Carya illinoinensis HOM05D002293 ORTHO05D006850 2.3e-28 129.4 135 56.3
Lalb_Chr12g0203491 Lupinus albus HOM05D002293 ORTHO05D006850 2.3e-28 129.4 135 54.8
Rhsim07G0116300 Rhododendron simsii HOM05D002293 ORTHO05D006850 3.0e-28 129.0 116 59.5
Sabra05G0070300 Salix brachista HOM05D002293 ORTHO05D006850 3.0e-28 129.0 117 60.7
Haze_25058 Corylus avellana HOM05D002293 ORTHO05D006850 3.9e-28 128.6 110 63.6
Thecc.01G114900 Theobroma cacao HOM05D002293 ORTHO05D006850 3.9e-28 128.6 135 55.6
CARHR115310 Cardamine hirsuta HOM05D002293 ORTHO05D006850 5.1e-28 128.3 67 86.6
PSO541G6313 Papaver somniferum HOM05D002293 ORTHO05D006850 5.1e-28 128.3 131 58.0
Nn5g28872 Nelumbo nucifera HOM05D002293 ORTHO05D006850 6.7e-28 127.9 126 57.9
Sopen05g030170 Solanum pennellii HOM05D002293 ORTHO05D006850 6.7e-28 127.9 116 60.3
BcaC03g13134 Brassica carinata HOM05D002293 ORTHO05D006850 8.8e-28 127.5 76 80.3
Sc03g0004470 Simmondsia chinensis HOM05D002293 ORTHO05D006850 8.8e-28 127.5 105 67.6
Cc07_g16420 Coffea canephora HOM05D002293 ORTHO05D006850 1.1e-27 127.1 105 65.7
Glyma.08G142700 Glycine max HOM05D002293 ORTHO05D006850 1.5e-27 126.7 136 56.6
GSVIVG01022247001 Vitis vinifera HOM05D002293 ORTHO05D006850 1.5e-27 126.7 107 63.6
Eucgr.I00313 Eucalyptus grandis HOM05D002293 ORTHO05D006850 2.0e-27 126.3 91 70.3
Actinidia12213 Actinidia chinensis HOM05D002293 ORTHO05D006850 4.4e-27 125.2 116 56.0
CAN.G871.5 Capsicum annuum HOM05D002293 ORTHO05D006850 4.4e-27 125.2 109 63.3
Medtr8g092030 Medicago truncatula HOM05D002293 ORTHO05D006850 4.4e-27 125.2 138 56.5
CSS0018890 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 5.7e-27 124.8 105 65.7
CSS0045484 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 5.7e-27 124.8 105 65.7
Nitab4.5_0004378g0040 Nicotiana tabacum HOM05D002293 ORTHO05D006850 5.7e-27 124.8 118 56.8
Solyc05g051700.3 Solanum lycopersicum HOM05D002293 ORTHO05D006850 5.7e-27 124.8 117 59.8
Nitab4.5_0000818g0200 Nicotiana tabacum HOM05D002293 ORTHO05D006850 7.4e-27 124.4 119 57.1
ATR1120G068 Amborella trichopoda HOM05D002293 ORTHO05D006850 9.7e-27 124.0 131 53.4
Potri.007G079600 Populus trichocarpa HOM05D002293 ORTHO05D006850 9.7e-27 124.0 142 55.6
PGR004G0821 Punica granatum HOM05D002293 ORTHO05D006850 9.7e-27 124.0 136 55.9
Sed0022357 Sechium edule HOM05D002293 ORTHO05D006850 9.7e-27 124.0 134 51.5
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 1.3e-26 123.6 126 58.7
Lj4g0027809 Lotus japonicus HOM05D002293 ORTHO05D006850 1.3e-26 123.6 129 55.0
Ca_17690_v3 Cicer arietinum L. HOM05D002293 ORTHO05D006850 1.7e-26 123.2 128 54.7
TPR.G2175 Trifolium pratense HOM05D002293 ORTHO05D006850 2.8e-26 122.5 117 59.8
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 2.8e-26 122.5 104 61.5
Psat7g050640 Pisum sativum HOM05D002293 ORTHO05D006850 3.7e-26 122.1 138 53.6
Gohir.D10G104800 Gossypium hirsutum HOM05D002293 ORTHO05D006850 1.1e-25 120.6 113 57.5
arahy.Tifrunner.gnm1.ann1.X6B8P2 Arachis hypogaea HOM05D002293 ORTHO05D006850 1.4e-25 120.2 162 46.3
DCAR_011459 Daucus carota HOM05D002293 ORTHO05D006850 1.4e-25 120.2 135 51.9
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 1.4e-25 120.2 108 60.2
Cpa.g.sc72.2 Carica papaya HOM05D002293 ORTHO05D006850 1.8e-25 119.8 68 80.9
Gohir.A10G084000 Gossypium hirsutum HOM05D002293 ORTHO05D006850 1.8e-25 119.8 109 59.6
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 1.8e-25 119.8 119 56.3
Gorai.011G114300 Gossypium raimondii HOM05D002293 ORTHO05D006850 2.4e-25 119.4 122 58.2
PGSC0003DMG400030100 Solanum tuberosum HOM05D002293 ORTHO05D006850 2.4e-25 119.4 106 62.3
Ah.03g141650 Amaranthus hybridus HOM05D002293 ORTHO05D006850 3.1e-25 119.0 106 59.4
Hma1.2p1_0375F.1_g138800 Hydrangea macrophylla HOM05D002293 ORTHO05D006850 3.1e-25 119.0 71 77.5
SalBow5G0495 Salvia bowleyana HOM05D002293 ORTHO05D006850 3.1e-25 119.0 105 59.0
Hund03525 Selenicereus undatus HOM05D002293 ORTHO05D006850 3.1e-25 119.0 116 59.5
EL10Ac6g14773 Beta vulgaris HOM05D002293 ORTHO05D006850 4.1e-25 118.6 136 50.7
Lj4A864T21 Lonicera japonica HOM05D002293 ORTHO05D006850 4.1e-25 118.6 68 77.9
vmacro18641 Vaccinium macrocarpon HOM05D002293 ORTHO05D006850 4.1e-25 118.6 68 77.9
Oeu044096.1 Olea europaea HOM05D002293 ORTHO05D006850 5.3e-25 118.2 87 67.8
Peaxi162Scf00167g00513 Petunia axillaris HOM05D002293 ORTHO05D006850 5.3e-25 118.2 68 79.4
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 1.5e-24 116.7 121 53.7
HanXRQChr12g0379751 Helianthus annuus HOM05D002293 ORTHO05D006850 2.6e-24 115.9 104 54.8
AUR62027166 Chenopodium quinoa HOM05D002293 ORTHO05D006850 3.4e-24 115.5 105 59.0
MSTRG.15755 Avicennia marina HOM05D002293 ORTHO05D006850 5.9e-24 114.8 105 58.1
AUR62003296 Chenopodium quinoa HOM05D002293 ORTHO05D006850 5.9e-24 114.8 119 55.5
ECA246G2776 Erigeron canadensis HOM05D002293 ORTHO05D006850 5.9e-24 114.8 94 57.4
SGA_v2.0_scaffold47G17699 Striga asiatica HOM05D002293 ORTHO05D006850 1.0e-23 114.0 106 56.6
Migut.H02444 Erythranthe guttata HOM05D002293 ORTHO05D006850 1.7e-23 113.2 130 49.2
arahy.Tifrunner.gnm1.ann1.KS5C3R Arachis hypogaea HOM05D002293 ORTHO05D006850 6.5e-23 111.3 64 79.7
unitig_899.g14611 Utricularia gibba HOM05D002293 ORTHO05D006850 2.5e-22 109.4 135 46.7
arahy.Tifrunner.gnm1.ann1.G7CS59 Arachis hypogaea HOM05D002293 ORTHO05D006850 5.5e-22 108.2 79 65.8
HPP92_023991 Vanilla planifolia HOM05D002293 ORTHO05D006850 3.6e-21 105.5 65 75.4
CDE06G1065 Ceratophyllum demersum HOM05D002293 ORTHO05D006850 7.9e-21 104.4 63 73.0
RcHm_v2.0_Chr5g0074521 Rosa chinensis HOM05D002293 ORTHO05D006850 2.3e-20 102.8 66 72.7
RcHm_v2.0_Chr3g0461771 Rosa chinensis HOM05D002293 ORTHO05D006850 1.1e-19 100.5 66 71.2
RcHm_v2.0_Chr6g0248211 Rosa chinensis HOM05D002293 ORTHO05D006850 1.1e-19 100.5 66 71.2
RcHm_v2.0_Chr5g0060841 Rosa chinensis HOM05D002293 ORTHO05D006850 1.5e-19 100.1 66 71.2
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 5.7e-19 98.2 68 64.7
RcHm_v2.0_Chr2g0158691 Rosa chinensis HOM05D002293 ORTHO05D006850 7.4e-19 97.8 66 69.7
AagrBONN_evm.TU.Sc2ySwM_362.938 Anthoceros agrestis HOM05D000606 ORTHO05D001265 9.7e-19 97.4 104 49.0
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.3e-18 97.1 109 46.8
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 6.3e-18 94.7 67 61.2
BcaB03g15697 Brassica carinata HOM05D002293 ORTHO05D006850 7.0e-17 91.3 71 67.6
Pp3c14_20400 Physcomitrium patens HOM05D002293 ORTHO05D006850 3.5e-16 89.0 60 61.7
CBR_g72684 Chara braunii HOM05D002293 ORTHO05D006850 4.5e-16 88.6 114 41.2
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 3.8e-15 85.5 41 92.7
C06p38600 Brassica napus HOM05D001833 ORTHO05D001776 2.7e-13 79.3 41 85.4
BolC2t06175H Brassica oleracea HOM05D002293 ORTHO05D006850 4.7e-13 78.6 41 85.4
RcHm_v2.0_Chr4g0391611 Rosa chinensis HOM05D002293 ORTHO05D006850 5.2e-12 75.1 52 67.3
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 6.7e-12 74.7 67 47.8
Sabra07G0066800 Salix brachista HOM05D002293 ORTHO05D006850 9.7e-11 70.9 98 48.0
Dinv42677 Davidia involucrata HOM05D002293 ORTHO05D006850 1.7e-07 60.1 71 52.1
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 1.1e-06 57.4 101 34.7
RcHm_v2.0_Chr3g0477511 Rosa chinensis HOM05D002293 ORTHO05D006850 1.1e-06 57.4 42 61.9
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 2.5e-06 56.2 95 30.5
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 3.2e-06 55.8 95 31.6
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 4.2e-06 55.5 117 29.9


User provided reference genes

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