Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 3.7e-160 568.2 290 100.0
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 3.7e-160 568.2 290 100.0
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 3.7e-160 568.2 290 100.0
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 4.6e-158 561.2 288 99.0
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.7e-157 559.3 288 98.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 3.3e-156 555.1 291 97.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.3e-156 555.1 290 96.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.6e-155 552.7 288 96.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.6e-155 552.7 290 95.9
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.8e-155 552.0 288 96.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 4.7e-155 551.2 288 96.5
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.4e-154 549.7 288 96.2
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.3e-154 548.9 290 95.5
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 6.8e-154 547.4 290 95.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 5.4e-151 537.7 290 93.8
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 6.0e-150 534.3 290 93.4
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-148 528.9 282 95.0
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 2.5e-148 528.9 282 95.0
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 3.3e-148 528.5 282 95.0
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.4e-143 513.1 292 89.0
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.3e-133 479.2 293 84.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.1e-130 470.3 292 82.2
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 3.5e-126 455.3 291 80.1
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.0e-126 454.5 291 79.4
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.0e-126 454.5 291 79.4
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 8.7e-125 450.7 291 78.4
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.5e-124 449.9 295 76.9
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 4.3e-124 448.4 293 77.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.6e-124 448.0 291 78.7
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.8e-123 445.7 291 78.0
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.8e-123 445.7 291 78.0
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 4.8e-123 444.9 291 78.0
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 2.4e-122 442.6 283 78.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 4.0e-122 441.8 296 75.7
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.2e-121 440.3 294 76.9
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-121 440.3 291 76.6
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.5e-121 439.9 293 75.1
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.0e-121 439.5 292 77.1
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 2.0e-121 439.5 291 76.3
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 4.5e-121 438.3 294 76.5
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 5.8e-121 438.0 292 77.1
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 7.6e-121 437.6 294 76.2
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.9e-120 435.6 294 76.9
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 4.9e-120 434.9 296 74.3
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.4e-120 434.5 294 76.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-119 433.7 294 75.9
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.1e-119 433.7 292 75.3
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 1.1e-119 433.7 299 74.9
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.1e-119 433.7 292 76.4
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.4e-119 433.3 293 76.5
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.4e-119 433.3 294 75.5
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.4e-119 433.3 296 74.7
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.2e-119 432.2 293 76.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 3.2e-119 432.2 292 75.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 4.2e-119 431.8 292 75.0
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 5.5e-119 431.4 294 74.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.2e-118 430.3 297 75.1
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 3.5e-118 428.7 297 74.7
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 3.5e-118 428.7 290 74.5
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.8e-117 426.4 299 74.2
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.3e-117 426.0 290 75.2
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.1e-117 424.9 290 75.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.7e-117 424.5 290 75.2
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.5e-116 423.3 290 74.8
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.5e-116 423.3 292 72.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.3e-116 421.8 291 74.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.3e-116 421.8 290 73.1
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 1.3e-115 420.2 291 74.9
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.3e-115 420.2 290 74.5
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.1e-115 419.5 296 74.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.1e-115 419.5 290 74.5
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.1e-115 419.5 293 73.4
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.1e-114 417.2 291 73.5
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 1.1e-114 417.2 291 73.5
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.4e-114 416.8 292 74.0
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.4e-114 416.8 292 73.3
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.4e-114 416.8 292 74.0
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 3.1e-114 415.6 293 72.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 3.1e-114 415.6 292 73.3
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 6.9e-114 414.5 291 73.5
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-113 413.7 292 74.7
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.0e-113 412.9 293 75.1
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 2.6e-113 412.5 290 72.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 3.4e-113 412.1 290 72.4
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 5.8e-113 411.4 294 71.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-112 410.2 282 75.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 3.8e-112 408.7 283 73.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 8.4e-112 407.5 289 72.3
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 73.2
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 3.2e-111 405.6 291 72.9
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 9.3e-111 404.1 295 72.2
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.6e-110 403.3 288 72.2
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.1e-110 402.9 291 71.1
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 2.7e-110 402.5 292 72.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.7e-110 402.5 294 70.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.6e-110 401.7 293 70.6
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 6.0e-110 401.4 289 72.3
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 7.9e-110 401.0 285 73.0
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.3e-109 400.2 296 72.3
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.8e-109 399.8 294 70.1
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.8e-109 399.8 289 71.6
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.1e-109 398.3 291 71.5
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 5.1e-109 398.3 289 69.9
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 5.1e-109 398.3 289 69.9
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.9e-108 396.4 289 69.9
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.3e-108 395.6 293 68.9
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.6e-108 394.0 292 68.8
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.3e-107 393.7 289 70.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.6e-107 393.3 292 70.9
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.8e-106 389.8 296 70.9
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.4e-106 389.4 295 70.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.1e-106 389.0 292 69.2
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 5.3e-106 388.3 285 70.5
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 6.9e-106 387.9 292 70.5
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.2e-105 387.1 295 71.2
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.6e-105 386.0 278 73.4
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.4e-105 385.6 292 69.5
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.5e-105 385.2 295 68.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.0e-104 384.0 293 69.6
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 2.2e-104 382.9 296 69.3
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 5.0e-104 381.7 291 70.8
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 6.5e-104 381.3 282 70.2
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-103 380.2 289 68.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.0e-101 374.0 295 66.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 6.7e-101 371.3 286 69.6
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.7e-100 367.5 268 70.5
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 4.8e-99 365.2 286 65.7
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.9e-98 361.3 291 63.6
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 5.9e-97 358.2 304 62.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.3e-96 357.1 292 66.4
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 5.0e-96 355.1 294 63.3
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.2e-95 352.1 260 69.6
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 3.0e-93 345.9 301 61.5
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 3.0e-93 345.9 295 62.7
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.0e-93 345.9 295 63.7
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.1e-92 344.0 303 62.0
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.0e-92 343.2 291 64.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.3e-92 342.4 303 61.4
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.7e-91 340.1 295 62.7
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 8.2e-91 337.8 293 63.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 9.1e-90 334.3 293 62.5
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 8.5e-88 327.8 295 60.3
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.7e-86 322.8 291 59.5
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 5.2e-85 318.5 278 60.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.3e-84 315.8 247 67.2
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.7e-84 315.1 214 78.0
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 7.5e-76 288.1 279 56.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-74 284.3 278 55.4
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 3.0e-69 266.2 267 56.9
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.4e-68 262.7 194 72.7
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 9.8e-60 234.6 143 79.7
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 4.9e-59 232.3 282 46.1
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 8.6e-56 221.5 278 49.3
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 6.6e-48 195.3 166 65.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-47 194.5 147 66.7
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.5e-47 194.1 126 72.2
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.9e-42 177.2 145 69.0
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 3.4e-28 129.8 114 61.4
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.9e-26 124.0 100 65.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.6e-25 120.9 112 59.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.1e-25 120.6 258 32.9
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 7.3e-23 112.1 99 62.6
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 8.1e-22 108.6 72 76.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 9.3e-18 95.1 73 61.6
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 4.9e-11 72.8 55 63.6
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-10 71.6 87 56.3
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 1.5e-07 61.2 164 31.7
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 2.5e-07 60.5 163 29.4
Ciclev10032509m.g Citrus clementina HOM05D005748 ORTHO05D007123 4.8e-06 56.2 166 31.3
PGR119G1070 Punica granatum HOM05D005748 ORTHO05D007123 6.2e-06 55.8 141 33.3


User provided reference genes

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