Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p51520 Brassica napus HOM05D003363 ORTHO05D003952 1.1e-98 363.2 177 100.0
BolC5t33837H Brassica oleracea HOM05D003363 ORTHO05D003952 4.3e-42 175.3 142 66.2
C02p62550 Brassica napus HOM05D003363 ORTHO05D003952 8.7e-35 151.0 239 44.4
BolC2t12314H Brassica oleracea HOM05D003363 ORTHO05D003952 1.9e-34 149.8 247 43.3
BcaC03g18190 Brassica carinata HOM05D003363 ORTHO05D003952 1.4e-32 143.7 243 42.8
BcaC03g18192 Brassica carinata HOM05D003363 ORTHO05D003952 5.3e-32 141.7 248 41.9
BcaB07g29680 Brassica carinata HOM05D003363 ORTHO05D003952 5.8e-31 138.3 249 41.0
BraA02t09192Z Brassica rapa HOM05D003363 ORTHO05D003952 5.8e-31 138.3 244 41.0
A02p42640 Brassica napus HOM05D003363 ORTHO05D003952 3.8e-30 135.6 238 40.8
AT5G63280 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 3.5e-28 129.0 161 46.0
Thhalv10004713m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 7.9e-28 127.9 257 37.0
Carub.0008s2403 Capsella rubella HOM05D003363 ORTHO05D003952 1.0e-27 127.5 161 46.0
AL8G40360 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 1.8e-27 126.7 161 46.0
Sp2g26400 Schrenkiella parvula HOM05D003363 ORTHO05D003952 2.3e-27 126.3 161 44.7
BcaC03g18189 Brassica carinata HOM05D003363 ORTHO05D003952 3.9e-27 125.6 147 50.3
Aa31LG1G18720 Aethionema arabicum HOM05D003363 ORTHO05D003952 2.8e-25 119.4 161 42.2
THA.LOC104821504 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 1.1e-24 117.5 164 42.7
CARHR277130 Cardamine hirsuta HOM05D003363 ORTHO05D003952 1.7e-22 110.2 161 41.6
CiPaw.11G012200 Carya illinoinensis HOM05D003363 ORTHO05D003952 1.9e-21 106.7 160 38.1
Cfa018894 Carpinus fangiana HOM05D003363 ORTHO05D003952 5.5e-21 105.1 164 39.0
Prupe.5G157300 Prunus persica HOM05D003363 ORTHO05D003952 5.5e-21 105.1 164 38.4
CDE02G1324 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 9.3e-21 104.4 114 49.1
TWI39G1178 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 2.7e-20 102.8 164 36.6
MD06G1157300 Malus domestica HOM05D003363 ORTHO05D003952 6.0e-20 101.7 161 37.9
Aqoxy5G03585 Aquilegia oxysepala HOM05D003363 ORTHO05D003952 1.0e-19 100.9 154 40.3
Manes.14G055400 Manihot esculenta HOM05D003363 ORTHO05D003952 1.0e-19 100.9 164 36.6
QL10p005254 Quercus lobata HOM05D003363 ORTHO05D003952 1.0e-19 100.9 157 38.2
RcHm_v2.0_Chr7g0191231 Rosa chinensis HOM05D003363 ORTHO05D003952 1.0e-19 100.9 166 36.7
Gohir.D07G058100 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.3e-19 100.5 164 36.6
Gorai.003G153400 Gossypium raimondii HOM05D003363 ORTHO05D003952 1.3e-19 100.5 164 36.6
PGR044G0111 Punica granatum HOM05D003363 ORTHO05D003952 1.3e-19 100.5 158 36.1
CANSAT80G1098 Cannabis sativa HOM05D003363 ORTHO05D003952 2.3e-19 99.8 159 39.0
Ciclev10020738m.g Citrus clementina HOM05D003363 ORTHO05D003952 2.3e-19 99.8 158 36.7
FvH4_5g07330 Fragaria vesca HOM05D003363 ORTHO05D003952 2.3e-19 99.8 164 36.0
Atru.chr9.1007 Acer truncatum HOM05D003363 ORTHO05D003952 3.0e-19 99.4 164 37.8
TWI14G0407 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 3.0e-19 99.4 164 36.0
Lsat_1_v5_gn_5_9541 Lactuca sativa HOM05D003363 ORTHO05D003952 3.9e-19 99.0 158 38.0
Eucgr.K02758 Eucalyptus grandis HOM05D003363 ORTHO05D003952 5.1e-19 98.6 161 36.6
Potri.015G090300 Populus trichocarpa HOM05D003363 ORTHO05D003952 5.1e-19 98.6 164 35.4
MD14G1163900 Malus domestica HOM05D003363 ORTHO05D003952 6.7e-19 98.2 161 37.9
PSO782G5587 Papaver somniferum HOM05D003363 ORTHO05D003952 1.1e-18 97.4 162 36.4
Gohir.A07G053700 Gossypium hirsutum HOM05D003363 ORTHO05D003952 1.5e-18 97.1 163 35.6
PSO063G7397 Papaver somniferum HOM05D003363 ORTHO05D003952 1.5e-18 97.1 162 36.4
Thecc.03G122500 Theobroma cacao HOM05D003363 ORTHO05D003952 1.5e-18 97.1 161 36.6
DCAR_026208 Daucus carota HOM05D003363 ORTHO05D003952 2.5e-18 96.3 158 36.1
Duzib205G2021 Durio zibethinus HOM05D003363 ORTHO05D003952 2.5e-18 96.3 164 35.4
Nn4g22463 Nelumbo nucifera HOM05D003363 ORTHO05D003952 2.5e-18 96.3 156 37.2
Solyc03g111370.3 Solanum lycopersicum HOM05D003363 ORTHO05D003952 5.7e-18 95.1 161 37.9
Sopen03g030500 Solanum pennellii HOM05D003363 ORTHO05D003952 5.7e-18 95.1 161 37.9
SGA_v2.0_scaffold161G37857 Striga asiatica HOM05D003363 ORTHO05D003952 7.4e-18 94.7 155 35.5
Hma1.2p1_0046F.1_g027570 Hydrangea macrophylla HOM05D003363 ORTHO05D003952 9.6e-18 94.4 166 34.9
Nitab4.5_0003282g0080 Nicotiana tabacum HOM05D003363 ORTHO05D003952 9.6e-18 94.4 157 39.5
GSVIVG01007546001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.3e-17 94.0 158 36.1
MBI11_g36296_MAGBIO Magnolia biondii HOM05D003363 ORTHO05D003952 1.6e-17 93.6 155 34.8
Cc04_g10450 Coffea canephora HOM05D003363 ORTHO05D003952 2.1e-17 93.2 163 35.0
Nitab4.5_0004750g0030 Nicotiana tabacum HOM05D003363 ORTHO05D003952 2.1e-17 93.2 157 38.2
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 2.1e-17 93.2 164 35.4
Gohir.D04G080400 Gossypium hirsutum HOM05D003363 ORTHO05D003952 2.8e-17 92.8 164 34.1
Actinidia36786 Actinidia chinensis HOM05D003363 ORTHO05D003952 3.7e-17 92.4 157 35.0
HanXRQChr04g0100731 Helianthus annuus HOM05D003363 ORTHO05D003952 4.8e-17 92.0 154 36.4
Sc03g0006920 Simmondsia chinensis HOM05D003363 ORTHO05D003952 6.2e-17 91.7 157 34.4
Eucgr.J02278 Eucalyptus grandis HOM05D003363 ORTHO05D003952 1.1e-16 90.9 158 34.2
HPP92_021371 Vanilla planifolia HOM05D003363 ORTHO05D003952 1.4e-16 90.5 153 37.9
Actinidia37253 Actinidia chinensis HOM05D003363 ORTHO05D003952 1.8e-16 90.1 163 35.0
Thecc.04G025900 Theobroma cacao HOM05D003363 ORTHO05D003952 1.8e-16 90.1 164 32.9
Oeu045481.1 Olea europaea HOM05D003363 ORTHO05D003952 2.4e-16 89.7 158 34.2
Sc03g0006980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 2.4e-16 89.7 157 33.8
TAR371G0872 Trochodendron aralioides HOM05D003363 ORTHO05D003952 2.4e-16 89.7 189 32.8
Gohir.A05G342200 Gossypium hirsutum HOM05D003363 ORTHO05D003952 3.1e-16 89.4 164 32.3
Sed0017360 Sechium edule HOM05D003363 ORTHO05D003952 3.1e-16 89.4 164 32.9
MSTRG.11295 Avicennia marina HOM05D003363 ORTHO05D003952 4.1e-16 89.0 158 32.9
Peaxi162Scf00089g00637 Petunia axillaris HOM05D003363 ORTHO05D003952 4.1e-16 89.0 165 35.8
CAN.G352.7 Capsicum annuum HOM05D003363 ORTHO05D003952 6.9e-16 88.2 155 36.1
Hund05644 Selenicereus undatus HOM05D003363 ORTHO05D003952 6.9e-16 88.2 158 36.1
MELO3C026232.2 Cucumis melo HOM05D003363 ORTHO05D003952 9.0e-16 87.8 161 33.5
CsaV3_1G000800 Cucumis sativus L. HOM05D003363 ORTHO05D003952 9.0e-16 87.8 161 33.5
CiPaw.04G032500 Carya illinoinensis HOM05D003363 ORTHO05D003952 1.5e-15 87.0 164 31.7
Ca_05565_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 1.5e-15 87.0 154 35.1
Ciclev10016239m.g Citrus clementina HOM05D003363 ORTHO05D003952 1.5e-15 87.0 164 31.7
Migut.I00466 Erythranthe guttata HOM05D003363 ORTHO05D003952 1.5e-15 87.0 177 33.3
FAN04G1323 Fragaria x ananassa HOM05D003363 ORTHO05D003952 1.5e-15 87.0 155 34.2
Os12g0233400 Oryza sativa ssp. japonica HOM05D003363 ORTHO05D003952 2.0e-15 86.7 155 34.2
Rhsim08G0184900 Rhododendron simsii HOM05D003363 ORTHO05D003952 2.6e-15 86.3 157 33.8
ECA247G0476 Erigeron canadensis HOM05D003363 ORTHO05D003952 4.5e-15 85.5 158 32.9
ATR0723G044 Amborella trichopoda HOM05D003363 ORTHO05D003952 7.6e-15 84.7 158 34.8
COL.COLO4_29261 Corchorus olitorius HOM05D003363 ORTHO05D003952 7.6e-15 84.7 164 32.3
CDE09G1349 Ceratophyllum demersum HOM05D003363 ORTHO05D003952 1.3e-14 84.0 155 32.9
DCAR_007468 Daucus carota HOM05D003363 ORTHO05D003952 1.3e-14 84.0 161 29.8
Medtr3g052770 Medicago truncatula HOM05D003363 ORTHO05D003952 2.9e-14 82.8 170 32.4
Psat4g062720 Pisum sativum HOM05D003363 ORTHO05D003952 3.8e-14 82.4 156 32.7
vmacro19240 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 5.0e-14 82.0 156 32.7
Ah.15g095330 Amaranthus hybridus HOM05D003363 ORTHO05D003952 6.5e-14 81.6 160 32.5
Glyma.13G086300 Glycine max HOM05D003363 ORTHO05D003952 6.5e-14 81.6 154 33.1
EL10Ac7g18071 Beta vulgaris HOM05D003363 ORTHO05D003952 8.4e-14 81.3 164 32.3
Lalb_Chr13g0297431 Lupinus albus HOM05D003363 ORTHO05D003952 8.4e-14 81.3 154 32.5
Cfa007288 Carpinus fangiana HOM05D003363 ORTHO05D003952 1.4e-13 80.5 164 31.1
THA.LOC104825306 Tarenaya hassleriana HOM05D003363 ORTHO05D003952 1.4e-13 80.5 163 33.1
TPR.G33745 Trifolium pratense HOM05D003363 ORTHO05D003952 1.4e-13 80.5 163 31.9
Cpa.g.sc130.47 Carica papaya HOM05D003363 ORTHO05D003952 1.9e-13 80.1 160 31.2
Haze_14805 Corylus avellana HOM05D003363 ORTHO05D003952 1.9e-13 80.1 164 32.3
CANSAT64G0613 Cannabis sativa HOM05D003363 ORTHO05D003952 2.5e-13 79.7 160 30.6
Lj4g0019567 Lotus japonicus HOM05D003363 ORTHO05D003952 4.2e-13 79.0 154 32.5
VMungo0647G1398 Vigna mungo HOM05D003363 ORTHO05D003952 4.2e-13 79.0 154 33.1
TWI56G0847 Tripterygium wilfordii HOM05D003363 ORTHO05D003952 7.2e-13 78.2 164 31.1
Psat5g174720 Pisum sativum HOM05D003363 ORTHO05D003952 1.2e-12 77.4 164 29.9
ClCG05G013160 Citrullus lanatus HOM05D003363 ORTHO05D003952 2.1e-12 76.6 158 29.7
Sed0026914 Sechium edule HOM05D003363 ORTHO05D003952 2.7e-12 76.3 158 31.0
Lj6g0014345 Lotus japonicus HOM05D003363 ORTHO05D003952 6.1e-12 75.1 164 28.7
arahy.Tifrunner.gnm1.ann1.1ZZG3Z Arachis hypogaea HOM05D003363 ORTHO05D003952 1.0e-11 74.3 158 31.0
MELO3C014840.2 Cucumis melo HOM05D003363 ORTHO05D003952 1.0e-11 74.3 158 29.1
Sabra15G0112500 Salix brachista HOM05D003363 ORTHO05D003952 1.0e-11 74.3 49 59.2
Haze_07278 Corylus avellana HOM05D003363 ORTHO05D003952 1.3e-11 73.9 49 59.2
Atru.chr6.2474 Acer truncatum HOM05D003363 ORTHO05D003952 1.8e-11 73.6 160 31.9
arahy.Tifrunner.gnm1.ann1.M32IQ6 Arachis hypogaea HOM05D003363 ORTHO05D003952 1.8e-11 73.6 158 31.0
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 2.3e-11 73.2 49 59.2
Lj5C100T14 Lonicera japonica HOM05D003363 ORTHO05D003952 2.3e-11 73.2 49 57.1
CSS0047112 Camellia sinensis var. sinensis HOM05D003363 ORTHO05D003952 3.0e-11 72.8 146 31.5
Cpa.g.sc4.69 Carica papaya HOM05D003363 ORTHO05D003952 3.0e-11 72.8 43 65.1
Ca_14750_v3 Cicer arietinum L. HOM05D003363 ORTHO05D003952 3.0e-11 72.8 164 29.9
FvH4_6g52420 Fragaria vesca HOM05D003363 ORTHO05D003952 3.9e-11 72.4 49 59.2
FAN02G0219 Fragaria x ananassa HOM05D003363 ORTHO05D003952 3.9e-11 72.4 49 59.2
FAN05G1134 Fragaria x ananassa HOM05D003363 ORTHO05D003952 3.9e-11 72.4 49 59.2
FAN14G1266 Fragaria x ananassa HOM05D003363 ORTHO05D003952 3.9e-11 72.4 49 59.2
Medtr4g104230 Medicago truncatula HOM05D003363 ORTHO05D003952 3.9e-11 72.4 154 31.8
PGR083G1927 Punica granatum HOM05D003363 ORTHO05D003952 5.1e-11 72.0 164 27.4
QL02p073211 Quercus lobata HOM05D003363 ORTHO05D003952 5.1e-11 72.0 205 28.3
Dinv11107 Davidia involucrata HOM05D003363 ORTHO05D003952 6.7e-11 71.6 49 59.2
Gorai.001G061600 Gossypium raimondii HOM05D003363 ORTHO05D003952 6.7e-11 71.6 45 60.0
RcHm_v2.0_Chr2g0174061 Rosa chinensis HOM05D003363 ORTHO05D003952 6.7e-11 71.6 49 55.1
Sed0001198 Sechium edule HOM05D003363 ORTHO05D003952 1.1e-10 70.9 158 27.8
Potri.001G336500 Populus trichocarpa HOM05D003363 ORTHO05D003952 1.5e-10 70.5 49 53.1
QL02p073113 Quercus lobata HOM05D003363 ORTHO05D003952 1.5e-10 70.5 49 57.1
Sabra16G0217300 Salix brachista HOM05D003363 ORTHO05D003952 1.5e-10 70.5 49 53.1
PGSC0003DMG400015181 Solanum tuberosum HOM05D003363 ORTHO05D003952 1.5e-10 70.5 49 59.2
VMungo0540G0103 Vigna mungo HOM05D003363 ORTHO05D003952 1.5e-10 70.5 49 55.1
BolC3t14658H Brassica oleracea HOM05D003363 ORTHO05D003952 1.9e-10 70.1 39 71.8
Phvul.006G046100 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 1.9e-10 70.1 49 57.1
Rhsim12G0171900 Rhododendron simsii HOM05D003363 ORTHO05D003952 2.5e-10 69.7 43 62.8
SalBow5G5513 Salvia bowleyana HOM05D003363 ORTHO05D003952 2.5e-10 69.7 45 57.8
SalBow5G5562 Salvia bowleyana HOM05D003363 ORTHO05D003952 2.5e-10 69.7 45 57.8
TPR.G37445 Trifolium pratense HOM05D003363 ORTHO05D003952 3.3e-10 69.3 154 29.9
TAR622G0704 Trochodendron aralioides HOM05D003363 ORTHO05D003952 3.3e-10 69.3 49 55.1
arahy.Tifrunner.gnm1.ann1.Z8QTTL Arachis hypogaea HOM05D003363 ORTHO05D003952 4.3e-10 68.9 49 55.1
FAN08G1495 Fragaria x ananassa HOM05D003363 ORTHO05D003952 4.3e-10 68.9 49 55.1
Manes.06G115000 Manihot esculenta HOM05D003363 ORTHO05D003952 4.3e-10 68.9 47 55.3
MD09G1018200 Malus domestica HOM05D003363 ORTHO05D003952 5.7e-10 68.6 47 55.3
Phvul.008G170300 Phaseolus vulgaris HOM05D003363 ORTHO05D003952 5.7e-10 68.6 39 64.1
FAN18G1106 Fragaria x ananassa HOM05D003363 ORTHO05D003952 7.4e-10 68.2 49 53.1
Duzib264G0961 Durio zibethinus HOM05D003363 ORTHO05D003952 9.7e-10 67.8 164 26.2
arahy.Tifrunner.gnm1.ann1.AN2TAK Arachis hypogaea HOM05D003363 ORTHO05D003952 1.3e-09 67.4 164 28.7
vmacro16707 Vaccinium macrocarpon HOM05D003363 ORTHO05D003952 1.3e-09 67.4 43 60.5
CARHR213800 Cardamine hirsuta HOM05D003363 ORTHO05D003952 1.6e-09 67.0 180 28.9
ClCG06G017650 Citrullus lanatus HOM05D003363 ORTHO05D003952 1.6e-09 67.0 45 57.8
CsaV3_3G027390 Cucumis sativus L. HOM05D003363 ORTHO05D003952 1.6e-09 67.0 158 27.8
QL02p073044 Quercus lobata HOM05D003363 ORTHO05D003952 1.6e-09 67.0 49 55.1
AL7G49030 Arabidopsis lyrata HOM05D003363 ORTHO05D003952 2.2e-09 66.6 163 29.4
arahy.Tifrunner.gnm1.ann1.EW7TJJ Arachis hypogaea HOM05D003363 ORTHO05D003952 2.2e-09 66.6 39 66.7
Glyma.18G094500 Glycine max HOM05D003363 ORTHO05D003952 2.2e-09 66.6 49 53.1
Glyma.08G319000 Glycine max HOM05D003363 ORTHO05D003952 3.7e-09 65.9 49 53.1
Lalb_Chr15g0081431 Lupinus albus HOM05D003363 ORTHO05D003952 3.7e-09 65.9 45 60.0
Manes.15G155700 Manihot esculenta HOM05D003363 ORTHO05D003952 6.3e-09 65.1 161 26.1
Aa31LG9G930 Aethionema arabicum HOM05D003363 ORTHO05D003952 1.4e-08 63.9 45 53.3
AT5G40710 Arabidopsis thaliana HOM05D003363 ORTHO05D003952 1.4e-08 63.9 47 46.8
Migut.I00253 Erythranthe guttata HOM05D003363 ORTHO05D003952 2.4e-08 63.2 51 52.9
Thhalv10027883m.g Eutrema salsugineum HOM05D003363 ORTHO05D003952 4.1e-08 62.4 47 44.7
C04p51790 Brassica napus HOM05D003363 ORTHO05D003952 5.3e-08 62.0 31 87.1
C06p38380 Brassica napus HOM05D003363 ORTHO05D003952 5.3e-08 62.0 31 87.1
Prupe.3G298900 Prunus persica HOM05D003363 ORTHO05D003952 6.9e-08 61.6 49 49.0
Sc04g0000980 Simmondsia chinensis HOM05D003363 ORTHO05D003952 6.9e-08 61.6 47 46.8
Zm00001eb411670 Zea mays HOM05D003363 ORTHO05D003952 9.0e-08 61.2 39 53.8
Dinv38473 Davidia involucrata HOM05D003363 ORTHO05D003952 1.2e-07 60.8 41 65.9
BcaC05g28957 Brassica carinata HOM05D003363 ORTHO05D094781 1.7e-06 57.0 25 100.0
ClCG06G017640 Citrullus lanatus HOM05D003363 ORTHO05D003952 8.5e-06 54.7 40 60.0


User provided reference genes

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