Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1141.7 616 100.0
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 0.0e+00 1139.8 616 99.8
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 0.0e+00 1139.8 616 99.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.9e-308 1060.8 620 93.4
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 4.6e-301 1037.3 624 92.1
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 4.8e-298 1027.3 623 90.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 4.8e-298 1027.3 623 90.7
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.8e-297 1025.4 630 90.0
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 7.6e-288 993.4 626 88.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 8.4e-287 989.9 622 87.8
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 8.4e-287 989.9 622 87.8
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 6.1e-285 983.8 616 88.5
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.9e-284 981.1 624 88.0
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.3e-274 949.5 624 85.9
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 2.7e-261 905.2 560 89.1
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.4e-241 839.7 586 80.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.0e-236 822.0 613 75.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 7.5e-235 817.4 423 100.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 5.2e-212 741.5 673 64.6
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.9e-210 734.9 664 64.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.1e-209 733.8 667 64.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.5e-208 728.8 640 66.1
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 3.5e-208 728.8 674 63.5
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.5e-208 728.8 675 63.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 6.0e-208 728.0 650 65.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 6.0e-208 728.0 650 65.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.0e-207 727.2 622 67.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.3e-207 726.1 635 66.6
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 3.9e-207 725.3 676 64.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.1e-207 724.9 668 64.7
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.5e-206 723.4 672 63.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.9e-206 723.0 680 63.4
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 7.3e-206 721.1 673 61.5
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.1e-205 719.5 654 65.0
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 8.1e-205 717.6 695 62.3
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.1e-204 717.2 670 63.6
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.4e-204 716.8 667 64.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.4e-204 716.8 649 65.5
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.4e-204 716.8 669 64.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.4e-204 716.8 519 76.1
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.1e-204 715.7 670 63.9
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.1e-204 715.7 661 64.9
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 4.0e-204 715.3 653 64.8
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.4e-202 708.0 695 59.7
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.2e-201 705.7 634 64.0
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.4e-201 704.9 670 64.0
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.4e-201 704.9 662 62.4
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.3e-199 700.3 662 63.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.1e-198 697.2 667 62.2
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 9.6e-198 694.1 682 61.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 9.6e-198 694.1 643 63.1
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 9.6e-198 694.1 657 63.8
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.1e-196 690.6 672 62.2
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.1e-196 690.6 637 65.1
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.8e-196 689.9 564 69.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.0e-196 688.7 653 62.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.2e-195 687.2 676 62.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.7e-194 683.3 677 61.3
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.7e-194 683.3 553 70.5
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-194 681.8 728 58.9
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-193 680.6 673 62.1
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 4.2e-193 678.7 669 62.2
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.2e-193 678.7 643 64.2
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.7e-191 673.3 603 65.2
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.3e-191 672.9 596 66.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.0e-191 672.5 569 68.0
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.1e-190 670.6 664 61.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.9e-190 669.8 666 61.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 4.8e-189 665.2 675 60.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.4e-188 663.7 624 63.1
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-188 661.8 617 63.7
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.0e-187 659.8 669 59.9
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.0e-187 659.8 647 62.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 9.9e-187 657.5 669 60.8
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 8.4e-186 654.4 632 61.9
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.9e-185 653.3 795 54.5
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 3.2e-185 652.5 670 58.5
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.7e-184 649.4 559 68.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 6.0e-184 648.3 637 61.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.0e-183 646.0 635 60.9
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 5.1e-183 645.2 683 57.5
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.1e-183 645.2 639 61.0
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.1e-182 644.0 683 57.5
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.1e-180 636.0 516 71.3
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.5e-179 633.6 647 60.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.1e-177 627.5 613 62.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.5e-177 626.3 666 55.4
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.2e-171 607.4 512 67.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.5e-171 605.5 726 51.5
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.8e-167 593.6 694 54.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.0e-164 581.3 569 57.5
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 3.6e-160 569.3 621 59.1
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.1e-159 565.5 496 67.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 8.8e-159 564.7 664 51.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.1e-156 557.8 464 69.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 7.9e-152 541.6 672 53.3
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 4.1e-148 529.3 666 48.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.0e-147 526.9 601 52.9
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.2e-146 523.5 610 55.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.7e-144 515.8 661 48.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 3.3e-142 509.6 612 53.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.2e-138 496.9 618 53.6
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.9e-138 496.5 687 51.4
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.2e-136 491.1 663 48.3
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.5e-131 472.6 405 68.4
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.5e-129 466.8 461 62.5
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.9e-117 426.8 592 45.4
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.0e-115 420.6 717 41.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.3e-114 417.2 607 44.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 4.6e-107 392.9 303 76.6
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.6e-107 392.9 598 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.6e-105 386.0 563 44.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.2e-104 384.8 503 52.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-104 382.1 278 74.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.3e-103 380.6 665 42.0
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 8.6e-98 362.1 663 41.3
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 7.3e-97 359.0 545 44.8
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.2e-86 325.1 309 69.9
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.1e-73 282.0 273 71.1
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.0e-71 272.3 296 55.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.7e-66 255.8 180 83.3
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-64 251.9 156 87.2
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 6.7e-58 229.6 312 52.2
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.7e-50 203.0 188 76.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.7e-49 199.9 291 42.6
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.6e-46 191.0 290 47.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.9e-42 177.2 103 92.2
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-38 165.2 90 92.2
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-38 165.2 90 92.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 3.4e-38 164.1 218 60.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.2e-36 157.5 277 44.0
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-34 151.4 79 96.2
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.0e-33 148.3 200 48.0
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.3e-32 143.3 81 79.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-29 135.6 289 32.5
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.3e-24 116.7 89 75.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.8e-21 107.5 224 34.4
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-17 95.9 58 74.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 4.4e-17 94.0 326 25.2
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-16 92.0 167 34.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 4.5e-14 84.0 51 80.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.1e-12 79.3 63 58.7
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.8e-11 74.7 235 28.9
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 4.9e-08 63.9 53 56.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.2e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.6e-06 58.9 32 90.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 2.0e-06 58.5 55 47.3
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.7e-06 58.2 34 85.3
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 2.7e-06 58.2 58 56.9


User provided reference genes

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