Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28929 Brassica carinata HOM05D006424 ORTHO05D007945 2.1e-157 558.9 268 100.0
C05p50560 Brassica napus HOM05D006424 ORTHO05D007945 2.1e-157 558.9 268 100.0
BolC5t33801H Brassica oleracea HOM05D006424 ORTHO05D007945 1.8e-156 555.8 268 99.6
A05p33570 Brassica napus HOM05D006424 ORTHO05D007945 6.7e-156 553.9 268 99.3
BcaB06g25691 Brassica carinata HOM05D006424 ORTHO05D007945 9.1e-153 543.5 268 96.6
BraA05t22180Z Brassica rapa HOM05D006424 ORTHO05D007945 2.6e-152 542.0 268 97.4
CARHR090930 Cardamine hirsuta HOM05D006424 ORTHO05D007945 1.8e-148 529.3 270 94.4
Carub.0003s1558 Capsella rubella HOM05D006424 ORTHO05D007945 3.3e-147 525.0 269 92.9
AT3G15840 Arabidopsis thaliana HOM05D006424 ORTHO05D007945 4.4e-147 524.6 269 93.3
AL3G28500 Arabidopsis lyrata HOM05D006424 ORTHO05D007945 1.3e-146 523.1 269 92.9
Thhalv10022443m.g Eutrema salsugineum HOM05D006424 ORTHO05D007945 2.2e-146 522.3 269 93.7
Sp3g14150 Schrenkiella parvula HOM05D006424 ORTHO05D007945 2.2e-146 522.3 268 93.3
A03p39490 Brassica napus HOM05D006424 ORTHO05D007945 8.2e-146 520.4 270 93.0
BraA03t13099Z Brassica rapa HOM05D006424 ORTHO05D007945 1.0e-143 513.5 270 92.2
C03p47890 Brassica napus HOM05D006424 ORTHO05D007945 2.9e-143 511.9 270 91.5
Aa31LG8G3030 Aethionema arabicum HOM05D006424 ORTHO05D007945 6.1e-141 504.2 269 88.1
BcaC01g03854 Brassica carinata HOM05D006424 ORTHO05D007945 5.7e-139 497.7 270 89.3
BolC3t17067H Brassica oleracea HOM05D006424 ORTHO05D007945 4.5e-136 488.0 289 82.7
THA.LOC104810510 Tarenaya hassleriana HOM05D006424 ORTHO05D007945 6.6e-119 431.0 272 75.4
Thecc.06G024200 Theobroma cacao HOM05D006424 ORTHO05D007945 3.6e-109 398.7 273 70.0
COL.COLO4_11949 Corchorus olitorius HOM05D006424 ORTHO05D007945 1.1e-108 397.1 273 68.9
Duzib192G0907 Durio zibethinus HOM05D006424 ORTHO05D007945 2.3e-108 396.0 269 69.9
Manes.11G056800 Manihot esculenta HOM05D006424 ORTHO05D007945 3.1e-108 395.6 279 66.7
Gohir.A06G185600 Gossypium hirsutum HOM05D006424 ORTHO05D007945 1.2e-107 393.7 275 68.0
Gohir.D06G192200 Gossypium hirsutum HOM05D006424 ORTHO05D007945 1.5e-107 393.3 274 68.2
Cpa.g.sc10.267 Carica papaya HOM05D006424 ORTHO05D007945 4.4e-107 391.7 282 67.4
Eucgr.F03876 Eucalyptus grandis HOM05D006424 ORTHO05D007945 4.4e-107 391.7 266 70.3
Sed0012965 Sechium edule HOM05D006424 ORTHO05D007945 1.3e-106 390.2 215 80.0
MELO3C023426.2 Cucumis melo HOM05D006424 ORTHO05D007945 1.7e-106 389.8 241 74.7
Nn2g12084 Nelumbo nucifera HOM05D006424 ORTHO05D007945 1.7e-106 389.8 266 70.3
PGR102G1391 Punica granatum HOM05D006424 ORTHO05D007945 2.2e-106 389.4 229 76.4
Gorai.010G225400 Gossypium raimondii HOM05D006424 ORTHO05D007945 2.9e-106 389.0 243 74.1
ClCG09G002940 Citrullus lanatus HOM05D006424 ORTHO05D007945 3.7e-106 388.7 220 78.6
Lalb_Chr04g0262371 Lupinus albus HOM05D006424 ORTHO05D007945 6.4e-106 387.9 274 67.9
Manes.04G112700 Manihot esculenta HOM05D006424 ORTHO05D007945 1.9e-105 386.3 216 78.2
CsaV3_7G032330 Cucumis sativus L. HOM05D006424 ORTHO05D007945 2.4e-105 386.0 220 76.8
Nn8g39504 Nelumbo nucifera HOM05D006424 ORTHO05D007945 7.1e-105 384.4 282 66.3
QL05p029818 Quercus lobata HOM05D006424 ORTHO05D007945 7.1e-105 384.4 261 68.6
AUR62011520 Chenopodium quinoa HOM05D006424 ORTHO05D007945 9.2e-105 384.0 282 66.7
GSVIVG01017340001 Vitis vinifera HOM05D006424 ORTHO05D007945 3.5e-104 382.1 257 69.3
AUR62016338 Chenopodium quinoa HOM05D006424 ORTHO05D007945 6.0e-104 381.3 282 66.0
Sabra01G0157400 Salix brachista HOM05D006424 ORTHO05D007945 7.8e-104 380.9 210 79.5
TWI12G0141 Tripterygium wilfordii HOM05D006424 ORTHO05D007945 1.0e-103 380.6 256 69.9
MD17G1212100 Malus domestica HOM05D006424 ORTHO05D007945 1.7e-103 379.8 281 65.1
Medtr4g010140 Medicago truncatula HOM05D006424 ORTHO05D007945 1.7e-103 379.8 280 64.6
Phvul.010G156300 Phaseolus vulgaris HOM05D006424 ORTHO05D007945 1.7e-103 379.8 276 63.8
Actinidia08796 Actinidia chinensis HOM05D006424 ORTHO05D007945 3.9e-103 378.6 242 69.4
PGSC0003DMG402028626 Solanum tuberosum HOM05D006424 ORTHO05D007945 3.9e-103 378.6 266 66.9
VMungo0331G1912 Vigna mungo HOM05D006424 ORTHO05D007945 3.9e-103 378.6 276 64.5
CSS0015595 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 5.1e-103 378.3 256 67.2
Lj3g0018478 Lotus japonicus HOM05D006424 ORTHO05D007945 1.1e-102 377.1 221 75.1
Potri.001G204300 Populus trichocarpa HOM05D006424 ORTHO05D007945 1.1e-102 377.1 242 70.2
Cc04_g04390 Coffea canephora HOM05D006424 ORTHO05D007945 1.5e-102 376.7 242 69.8
Hma1.2p1_0042F.1_g025600 Hydrangea macrophylla HOM05D006424 ORTHO05D007945 1.5e-102 376.7 268 66.4
Solyc12g042770.3 Solanum lycopersicum HOM05D006424 ORTHO05D007945 2.5e-102 375.9 266 66.2
Lj9A500T81 Lonicera japonica HOM05D006424 ORTHO05D007945 3.3e-102 375.6 244 68.9
Oeu039429.1 Olea europaea HOM05D006424 ORTHO05D007945 4.3e-102 375.2 228 73.7
Actinidia15982 Actinidia chinensis HOM05D006424 ORTHO05D007945 5.6e-102 374.8 242 68.6
Ca_20445_v3 Cicer arietinum L. HOM05D006424 ORTHO05D007945 5.6e-102 374.8 289 62.3
Nitab4.5_0009497g0010 Nicotiana tabacum HOM05D006424 ORTHO05D007945 5.6e-102 374.8 281 63.3
Prupe.3G087300 Prunus persica HOM05D006424 ORTHO05D007945 5.6e-102 374.8 283 62.9
Rhsim12G0191200 Rhododendron simsii HOM05D006424 ORTHO05D007945 7.3e-102 374.4 235 71.9
Sopen12g021950 Solanum pennellii HOM05D006424 ORTHO05D007945 7.3e-102 374.4 266 65.8
FAN14G0356 Fragaria x ananassa HOM05D006424 ORTHO05D007945 9.5e-102 374.0 216 78.2
RcHm_v2.0_Chr2g0135411 Rosa chinensis HOM05D006424 ORTHO05D007945 9.5e-102 374.0 216 78.7
MSTRG.22746 Avicennia marina HOM05D006424 ORTHO05D007945 1.2e-101 373.6 263 67.7
FAN02G1519 Fragaria x ananassa HOM05D006424 ORTHO05D007945 2.1e-101 372.9 216 77.8
CSS0035863 Camellia sinensis var. sinensis HOM05D006424 ORTHO05D007945 2.8e-101 372.5 273 64.5
CANSAT56G3050 Cannabis sativa HOM05D006424 ORTHO05D007945 2.8e-101 372.5 220 76.4
Atru.chr1.2950 Acer truncatum HOM05D006424 ORTHO05D007945 4.7e-101 371.7 280 63.2
FAN05G3690 Fragaria x ananassa HOM05D006424 ORTHO05D007945 4.7e-101 371.7 216 76.4
HanXRQChr04g0097881 Helianthus annuus HOM05D006424 ORTHO05D007945 6.2e-101 371.3 232 72.0
Peaxi162Scf00034g01413 Petunia axillaris HOM05D006424 ORTHO05D007945 8.1e-101 370.9 290 65.2
MBI04_g29330_MAGBIO Magnolia biondii HOM05D006424 ORTHO05D007945 1.1e-100 370.5 218 76.1
Cfa001961 Carpinus fangiana HOM05D006424 ORTHO05D007945 2.4e-100 369.4 276 63.0
TAR383G1051 Trochodendron aralioides HOM05D006424 ORTHO05D007945 2.4e-100 369.4 277 65.0
DCAR_021344 Daucus carota HOM05D006424 ORTHO05D007945 3.1e-100 369.0 213 76.5
CiPaw.02G157300 Carya illinoinensis HOM05D006424 ORTHO05D007945 4.0e-100 368.6 275 62.5
Glyma.08G213000 Glycine max HOM05D006424 ORTHO05D007945 4.0e-100 368.6 278 65.5
Glyma.07G029900 Glycine max HOM05D006424 ORTHO05D007945 6.8e-100 367.9 270 64.8
TPR.G38617 Trifolium pratense HOM05D001630 ORTHO05D007945 9.9e-99 364.0 274 63.1
Haze_16559 Corylus avellana HOM05D006424 ORTHO05D007945 6.4e-98 361.3 284 63.7
Migut.I00764 Erythranthe guttata HOM05D006424 ORTHO05D007945 6.4e-98 361.3 279 64.2
CiPaw.01G248200 Carya illinoinensis HOM05D006424 ORTHO05D007945 1.4e-97 360.1 253 66.8
Ciclev10026222m.g Citrus clementina HOM05D006424 ORTHO05D007945 1.9e-97 359.8 255 63.5
ATR0322G065 Amborella trichopoda HOM05D006424 ORTHO05D007945 1.2e-96 357.1 227 68.7
CAN.G47.13 Capsicum annuum HOM05D006424 ORTHO05D007945 6.0e-96 354.8 208 75.0
PSO210G3245 Papaver somniferum HOM05D006424 ORTHO05D007945 1.3e-95 353.6 278 60.4
PSO210G5365 Papaver somniferum HOM05D006424 ORTHO05D007945 1.3e-95 353.6 278 60.1
unitig_27.g24949 Utricularia gibba HOM05D006424 ORTHO05D007945 2.3e-95 352.8 269 61.3
arahy.Tifrunner.gnm1.ann1.92ZGJC Arachis hypogaea HOM05D006424 ORTHO05D007945 3.9e-95 352.1 277 62.1
Ah.01g020600 Amaranthus hybridus HOM05D006424 ORTHO05D007945 1.1e-94 350.5 208 75.5
vmacro16897 Vaccinium macrocarpon HOM05D006424 ORTHO05D007945 1.9e-94 349.7 209 72.2
ECA247G2617 Erigeron canadensis HOM05D006424 ORTHO05D007945 9.6e-94 347.4 268 60.8
FvH4_6g29710 Fragaria vesca HOM05D006424 ORTHO05D007945 2.1e-93 346.3 195 78.5
Aqoxy7G03662 Aquilegia oxysepala HOM05D006424 ORTHO05D007945 2.8e-93 345.9 279 58.8
CDE07G1654 Ceratophyllum demersum HOM05D006424 ORTHO05D007945 3.1e-92 342.4 225 70.7
Lsat_1_v5_gn_1_34401 Lactuca sativa HOM05D006424 ORTHO05D007945 6.9e-92 341.3 295 55.6
Nitab4.5_0003157g0020 Nicotiana tabacum HOM05D006424 ORTHO05D007945 6.9e-92 341.3 281 59.4
FAN09G3401 Fragaria x ananassa HOM05D006424 ORTHO05D007945 8.4e-90 334.3 234 67.5
Os03g0586500 Oryza sativa ssp. japonica HOM05D006424 ORTHO05D007945 2.5e-86 322.8 218 66.5
Zm00001eb049190 Zea mays HOM05D006424 ORTHO05D007945 1.5e-83 313.5 210 68.1
Zm00001eb219530 Zea mays HOM05D006424 ORTHO05D007945 1.6e-80 303.5 231 61.9
Mapoly0024s0088 Marchantia polymorpha HOM05D006424 ORTHO05D007945 5.6e-78 295.0 230 56.5
SalBow2G1302 Salvia bowleyana HOM05D006424 ORTHO05D007945 2.8e-77 292.7 241 61.0
Thecc.06G024600 Theobroma cacao HOM05D006424 ORTHO05D007945 1.9e-73 280.0 206 65.5
Pp3c9_11540 Physcomitrium patens HOM05D006424 ORTHO05D007945 3.5e-72 275.8 247 51.0
Pp3c22_2660 Physcomitrium patens HOM05D006424 ORTHO05D007945 5.1e-71 271.9 219 54.3
Dinv38123 Davidia involucrata HOM05D006424 ORTHO05D007945 1.9e-70 270.0 211 63.0
Sed0007474 Sechium edule HOM05D006424 ORTHO05D007945 2.5e-70 269.6 144 79.9
AagrBONN_evm.TU.Sc2ySwM_344.5484 Anthoceros agrestis HOM05D006424 ORTHO05D007945 1.6e-69 266.9 243 51.9
CBR_g38381 Chara braunii HOM05D006424 ORTHO05D007945 3.4e-67 259.2 202 55.0
SMO331G0083 Selaginella moellendorffii HOM05D006424 ORTHO05D007945 1.1e-65 254.2 204 54.4
Thecc.K0004600 Theobroma cacao HOM05D006424 ORTHO05D007945 1.1e-65 254.2 147 78.2
Hund06560 Selenicereus undatus HOM05D006424 ORTHO05D007945 2.5e-57 226.5 181 59.1
Pp3c15_11500 Physcomitrium patens HOM05D006424 ORTHO05D007945 1.6e-56 223.8 182 54.9
SEGI_16074 Sequoiadendron giganteum HOM05D006424 ORTHO05D007945 2.0e-54 216.9 169 58.0
arahy.Tifrunner.gnm1.ann1.7R86JN Arachis hypogaea HOM05D006424 ORTHO05D007945 9.7e-54 214.5 276 46.0
EL10Ac9g21901 Beta vulgaris HOM05D006424 ORTHO05D007945 1.3e-45 187.6 164 58.5
Psat7g257120 Pisum sativum HOM05D006424 ORTHO05D007945 3.7e-45 186.0 171 52.6
QL05p029868 Quercus lobata HOM05D006424 ORTHO05D007945 1.2e-32 144.4 134 53.0
QL05p029832 Quercus lobata HOM05D006424 ORTHO05D007945 1.8e-23 114.0 81 61.7
Oeu000425.1 Olea europaea HOM05D006424 ORTHO05D007945 1.5e-22 110.9 136 41.9
arahy.Tifrunner.gnm1.ann1.ZYH6JG Arachis hypogaea HOM05D006424 ORTHO05D007945 2.8e-16 90.1 55 72.7
arahy.Tifrunner.gnm1.ann1.YP381G Arachis hypogaea HOM05D006424 ORTHO05D007945 1.2e-11 74.7 37 83.8


User provided reference genes

Program Settings