Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 1.3e-39 166.0 88 100.0
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.8e-25 119.0 83 80.7
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 4.9e-23 110.9 65 93.8
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 6.5e-23 110.5 65 93.8
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 6.5e-23 110.5 65 93.8
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.5e-23 110.5 65 93.8
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.9e-22 109.0 65 92.3
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 4.2e-22 107.8 63 95.2
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 9.3e-22 106.7 74 86.5
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.2e-21 106.3 65 90.8
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.7e-21 105.1 65 90.8
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 2.3e-20 102.1 83 71.1
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 3.9e-20 101.3 65 87.7
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 3.9e-20 101.3 65 87.7
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.7e-20 100.5 65 86.2
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 1.1e-19 99.8 65 86.2
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 1.1e-19 99.8 65 86.2
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 1.5e-19 99.4 65 86.2
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.9e-19 99.0 65 87.7
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.9e-19 99.0 65 86.2
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.5e-19 98.6 65 84.6
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.3e-19 98.2 65 86.2
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.3e-19 97.8 65 86.2
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 4.3e-19 97.8 65 84.6
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 4.3e-19 97.8 65 87.7
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 4.3e-19 97.8 65 86.2
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 7.4e-19 97.1 65 83.1
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 7.4e-19 97.1 65 86.2
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 7.4e-19 97.1 65 86.2
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 7.4e-19 97.1 65 86.2
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 9.7e-19 96.7 65 86.2
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.8e-18 95.1 65 83.1
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 2.8e-18 95.1 67 82.1
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 2.8e-18 95.1 65 83.1
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.8e-18 95.1 81 69.1
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 3.7e-18 94.7 65 83.1
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.7e-18 94.7 65 84.6
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 4.8e-18 94.4 65 83.1
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 4.8e-18 94.4 63 85.7
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 6.3e-18 94.0 65 81.5
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 6.3e-18 94.0 84 67.9
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 6.3e-18 94.0 65 83.1
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-17 93.2 62 83.9
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-17 93.2 62 83.9
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.1e-17 93.2 62 83.9
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-17 93.2 62 83.9
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-17 93.2 62 83.9
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.1e-17 93.2 65 81.5
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.1e-17 93.2 65 81.5
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.4e-17 92.8 65 81.5
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.4e-17 92.8 65 81.5
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 1.4e-17 92.8 65 81.5
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 1.8e-17 92.4 62 83.9
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.8e-17 92.4 65 81.5
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 2.4e-17 92.0 60 83.3
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 2.4e-17 92.0 60 83.3
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 3.1e-17 91.7 85 69.4
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 4.1e-17 91.3 65 80.0
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 4.1e-17 91.3 65 80.0
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 4.1e-17 91.3 65 80.0
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 5.3e-17 90.9 75 74.7
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 5.3e-17 90.9 82 69.5
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 9.0e-17 90.1 65 78.5
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 9.0e-17 90.1 65 84.6
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 9.0e-17 90.1 65 81.5
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 9.0e-17 90.1 65 81.5
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.2e-16 89.7 65 84.6
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.2e-16 89.7 65 78.5
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.5e-16 89.4 71 73.2
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.5e-16 89.4 65 78.5
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.0e-16 89.0 65 78.5
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 3.4e-16 88.2 65 75.4
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 4.5e-16 87.8 62 79.0
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 4.5e-16 87.8 65 75.4
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 5.9e-16 87.4 65 75.4
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 5.9e-16 87.4 61 80.3
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 5.9e-16 87.4 65 81.5
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 5.9e-16 87.4 74 71.6
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 5.9e-16 87.4 65 78.5
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 5.9e-16 87.4 65 80.0
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 7.7e-16 87.0 65 78.5
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.0e-15 86.7 65 80.0
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.3e-15 86.3 65 73.8
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 1.3e-15 86.3 65 81.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.7e-15 85.9 65 81.5
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 2.9e-15 85.1 65 75.4
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 2.9e-15 85.1 65 75.4
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 3.8e-15 84.7 93 60.2
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 3.8e-15 84.7 65 76.9
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 5.0e-15 84.3 64 76.6
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 6.5e-15 84.0 66 78.8
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 8.5e-15 83.6 60 76.7
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 1.1e-14 83.2 76 64.5
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.4e-14 82.8 62 74.2
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.4e-14 82.8 64 73.4
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 1.9e-14 82.4 65 72.3
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 2.5e-14 82.0 64 71.9
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 3.2e-14 81.6 60 76.7
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 4.2e-14 81.3 65 72.3
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 7.2e-14 80.5 58 75.9
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 7.2e-14 80.5 63 76.2
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.1e-13 77.4 54 77.8
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 6.1e-13 77.4 61 70.5
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.4e-12 76.3 90 56.7
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.4e-12 76.3 54 77.8
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 8.8e-12 73.6 60 75.0
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 1.1e-11 73.2 55 80.0
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 3.3e-11 71.6 65 66.2
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 3.3e-11 71.6 65 66.2
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 9.7e-11 70.1 60 68.3
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 1.4e-09 66.2 54 75.9
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 2.4e-09 65.5 60 65.0
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.2e-08 63.2 63 60.3
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 2.0e-08 62.4 42 83.3
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 2.0e-08 62.4 68 60.3
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 3.4e-08 61.6 65 63.1
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.9e-08 60.8 67 61.2
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 3.8e-07 58.2 36 88.9
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.5e-06 55.5 36 83.3


User provided reference genes

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