Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 4.1e-75 284.6 146 100.0
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 4.1e-75 284.6 146 100.0
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 4.1e-75 284.6 146 100.0
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 3.5e-74 281.6 146 99.3
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 3.5e-74 281.6 146 99.3
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-73 278.1 146 97.3
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-73 278.1 146 97.9
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 5.1e-73 277.7 146 97.3
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 8.7e-73 276.9 146 96.6
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.5e-72 276.2 146 96.6
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 9.6e-72 273.5 146 95.9
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.6e-71 271.6 146 94.5
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.8e-70 269.2 146 93.2
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 3.1e-70 268.5 146 93.2
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 5.8e-69 264.2 146 92.5
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 7.6e-69 263.8 146 91.8
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 7.6e-69 263.8 146 91.8
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 7.6e-69 263.8 146 91.1
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.3e-68 263.1 146 91.8
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-68 263.1 146 91.1
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-68 263.1 146 91.1
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.7e-68 262.7 146 91.1
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 2.2e-68 262.3 146 91.1
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 2.2e-68 262.3 146 91.1
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 2.9e-68 261.9 146 90.4
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 4.9e-68 261.2 146 91.1
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 4.9e-68 261.2 146 91.1
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 6.4e-68 260.8 146 89.7
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 8.4e-68 260.4 146 91.1
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 89.7
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.2e-67 258.1 146 89.0
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 3.9e-65 251.5 144 88.9
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 2.4e-62 242.3 146 83.6
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 6.9e-62 240.7 146 82.2
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 83.6
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 1.2e-61 240.0 146 82.9
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.5e-61 239.6 145 82.1
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.0e-61 239.2 146 82.2
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 3.4e-61 238.4 147 83.7
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 4.5e-61 238.0 146 81.5
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 7.6e-61 237.3 146 81.5
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 9.9e-61 236.9 146 81.5
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 81.5
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.3e-60 236.5 146 82.2
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 1.7e-60 236.1 146 80.1
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 2.2e-60 235.7 146 81.5
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 80.1
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.9e-60 234.6 146 78.1
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 8.4e-60 233.8 146 80.8
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.1e-59 233.4 147 82.3
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.1e-59 233.4 146 80.8
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.9e-59 232.6 146 80.1
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 78.8
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 79.5
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.4e-59 232.3 146 80.8
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 2.4e-59 232.3 147 79.6
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.2e-59 231.9 146 78.1
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 7.1e-59 230.7 146 80.1
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 78.8
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 79.5
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 78.1
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 9.3e-59 230.3 146 80.8
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 78.8
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 78.8
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 79.5
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 1.2e-58 229.9 146 79.5
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.6e-58 229.6 145 79.3
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.6e-58 229.6 146 77.4
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 76.7
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 76.7
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 2.1e-58 229.2 146 77.4
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 3.5e-58 228.4 147 79.6
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 3.5e-58 228.4 147 79.6
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 80.1
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 77.4
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.6e-58 228.0 147 78.9
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 4.6e-58 228.0 146 79.5
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 6.0e-58 227.6 146 76.7
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 79.5
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 7.9e-58 227.3 146 76.7
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 78.8
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 76.0
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.0e-57 226.9 146 77.4
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 76.0
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 78.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.3e-57 226.5 146 76.0
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.8e-57 226.1 146 78.1
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 78.8
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 76.0
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 2.3e-57 225.7 148 77.7
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 76.0
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 2.3e-57 225.7 146 78.1
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 3.0e-57 225.3 146 78.8
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 78.8
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 3.9e-57 224.9 146 76.7
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 79.5
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 5.1e-57 224.6 146 76.0
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 5.1e-57 224.6 150 78.0
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 6.7e-57 224.2 146 78.1
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 77.4
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 78.1
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 76.0
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 8.7e-57 223.8 146 77.4
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 75.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.1e-56 223.4 146 78.1
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.5e-56 223.0 146 74.7
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 1.5e-56 223.0 139 81.3
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 76.0
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 1.9e-56 222.6 146 76.7
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.9e-56 222.6 147 76.9
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 76.7
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 2.5e-56 222.2 146 76.7
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 2.5e-56 222.2 147 76.2
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 3.3e-56 221.9 146 76.0
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 5.6e-56 221.1 146 75.3
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 7.4e-56 220.7 147 77.6
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 7.4e-56 220.7 146 75.3
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 9.6e-56 220.3 147 77.6
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.3e-55 219.9 146 76.7
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 1.3e-55 219.9 146 77.4
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.3e-55 219.9 146 76.7
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 1.3e-55 219.9 146 76.7
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.6e-55 219.5 147 76.9
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.0
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.0
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 3.7e-55 218.4 146 75.3
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 3.7e-55 218.4 143 75.5
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 76.0
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 6.2e-55 217.6 146 76.0
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.1e-54 216.9 146 75.3
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 5.3e-54 214.5 138 79.7
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.2e-53 213.4 146 69.9
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 4.5e-53 211.5 146 74.7
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 7.6e-53 210.7 147 74.8
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 9.9e-53 210.3 147 74.8
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 4.9e-52 208.0 137 75.9
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 4.9e-52 208.0 147 75.5
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 6.4e-52 207.6 147 70.7
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 8.4e-52 207.2 147 74.8
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.4e-51 206.5 146 68.5
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.4e-51 205.7 118 86.4
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 7.1e-51 204.1 102 97.1
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 1.2e-50 203.4 146 71.9
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.6e-50 203.0 146 72.6
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 6.0e-50 201.1 146 71.9
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.3e-49 199.9 146 71.9
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 3.9e-49 198.4 144 70.8
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.1e-49 198.0 146 70.5
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 9.6e-48 193.7 130 73.1
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.6e-47 193.0 146 70.5
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 1.6e-47 193.0 147 72.1
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.2e-45 186.8 103 85.4
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 4.5e-45 184.9 143 67.8
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 2.5e-43 179.1 146 72.6
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 5.5e-43 177.9 146 72.6
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.6e-42 176.4 137 73.0
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 4.5e-37 158.3 139 55.4
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.0e-36 157.1 138 58.0
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 2.1e-34 149.4 99 78.8
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.0e-33 147.1 151 57.6
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 7.4e-32 141.0 146 52.7
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 6.9e-30 134.4 86 79.1
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 9.1e-30 134.0 86 79.1
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.2e-26 123.6 80 73.8
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 2.7e-26 122.5 86 69.8
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 3.9e-25 118.6 146 51.4
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 7.2e-19 97.8 60 76.7
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 8.8e-17 90.9 63 71.4
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 8.8e-17 90.9 126 39.7
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 4.8e-15 85.1 64 70.3
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 8.5e-12 74.3 118 43.2
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 5.5e-11 71.6 99 39.4
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 8.0e-10 67.8 137 34.3
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 1.0e-09 67.4 33 90.9


User provided reference genes

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