Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p49920 Brassica napus HOM05D015564 ORTHO05D017498 6.2e-58 227.3 115 100.0
BcaC09g50490 Brassica carinata HOM05D015564 ORTHO05D017498 4.9e-47 191.0 114 86.0
A05p23760 Brassica napus HOM05D015564 ORTHO05D017498 5.6e-43 177.6 119 79.8
A06p23420 Brassica napus HOM05D015564 ORTHO05D017498 2.1e-42 175.6 139 72.7
C06p43250 Brassica napus HOM05D015564 ORTHO05D017498 3.2e-30 135.2 64 100.0
C07p06390 Brassica napus HOM05D015564 ORTHO05D017498 9.6e-27 123.6 67 91.0
BolC5t32470H Brassica oleracea HOM05D015564 ORTHO05D017498 1.6e-13 79.7 114 52.6
BcaC06g31200 Brassica carinata HOM05D000442 ORTHO05D001979 7.9e-13 77.4 40 90.0
C07p33660 Brassica napus HOM05D000442 ORTHO05D001979 7.9e-13 77.4 40 90.0
BolC7t43876H Brassica oleracea HOM05D000442 ORTHO05D001979 2.3e-12 75.9 40 87.5
A06p43290 Brassica napus HOM05D000442 ORTHO05D001979 3.3e-11 72.0 40 85.0
BraA06t27215Z Brassica rapa HOM05D000442 ORTHO05D001979 3.3e-11 72.0 40 85.0
Carub.0005s0194 Capsella rubella HOM05D000442 ORTHO05D001979 1.3e-10 70.1 40 85.0
AL5G12760 Arabidopsis lyrata HOM05D000442 ORTHO05D001979 4.8e-10 68.2 40 82.5
BcaC05g25314 Brassica carinata HOM05D000442 ORTHO05D001979 4.8e-10 68.2 40 77.5
CARHR145450 Cardamine hirsuta HOM05D000442 ORTHO05D001979 6.3e-10 67.8 40 82.5
AL1G26040 Arabidopsis lyrata HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
A06p10160 Brassica napus HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
A09p62410 Brassica napus HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
C05p11940 Brassica napus HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
BolC5t29944H Brassica oleracea HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
BolC5t29951H Brassica oleracea HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
BraA06t24200Z Brassica rapa HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
BraA09t41605Z Brassica rapa HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
Thhalv10004222m.g Eutrema salsugineum HOM05D000442 ORTHO05D001979 8.2e-10 67.4 40 77.5
BcaB08g34373 Brassica carinata HOM05D000442 ORTHO05D001979 1.1e-09 67.0 40 75.0
C08p45970 Brassica napus HOM05D000442 ORTHO05D001979 1.1e-09 67.0 40 77.5
BolC8t52148H Brassica oleracea HOM05D000442 ORTHO05D001979 1.1e-09 67.0 40 77.5
Thhalv10006996m.g Eutrema salsugineum HOM05D000442 ORTHO05D001979 1.1e-09 67.0 40 77.5
AT1G14170 Arabidopsis thaliana HOM05D000442 ORTHO05D001979 1.8e-09 66.2 40 75.0
Carub.0001s1384 Capsella rubella HOM05D000442 ORTHO05D001979 2.4e-09 65.9 40 75.0
Sp1g12510 Schrenkiella parvula HOM05D000442 ORTHO05D001979 2.4e-09 65.9 40 75.0
BcaC07g41596 Brassica carinata HOM05D000442 ORTHO05D001979 6.9e-09 64.3 40 72.5
Aa31LG2G7310 Aethionema arabicum HOM05D000442 ORTHO05D001979 1.5e-08 63.2 40 77.5
Aa31LG1G920 Aethionema arabicum HOM05D000442 ORTHO05D001979 2.0e-08 62.8 60 58.3
CARHR014570 Cardamine hirsuta HOM05D000442 ORTHO05D001979 2.6e-08 62.4 40 72.5
Atru.chr11.1759 Acer truncatum HOM05D000442 ORTHO05D001979 1.7e-07 59.7 39 66.7
BcaB02g06517 Brassica carinata HOM05D000442 ORTHO05D001979 2.9e-07 58.9 39 71.8
Potri.010G167100 Populus trichocarpa HOM05D000442 ORTHO05D001979 2.9e-07 58.9 40 62.5
BcaB01g05065 Brassica carinata HOM05D000442 ORTHO05D001979 3.8e-07 58.5 37 67.6
A03p07080 Brassica napus HOM05D000442 ORTHO05D001979 3.8e-07 58.5 37 67.6
C03p08060 Brassica napus HOM05D000442 ORTHO05D001979 3.8e-07 58.5 37 67.6
BolC3t13304H Brassica oleracea HOM05D000442 ORTHO05D001979 3.8e-07 58.5 37 67.6
BraA03t10030Z Brassica rapa HOM05D000442 ORTHO05D001979 3.8e-07 58.5 37 67.6
ECA233G4166 Erigeron canadensis HOM05D000442 ORTHO05D001979 3.8e-07 58.5 39 64.1
GSVIVG01019958001 Vitis vinifera HOM05D000442 ORTHO05D001979 3.8e-07 58.5 39 69.2
Psat3g200120 Pisum sativum HOM05D000442 ORTHO05D001979 5.0e-07 58.2 40 65.0
Ciclev10031267m.g Citrus clementina HOM05D000442 ORTHO05D001979 6.5e-07 57.8 39 66.7
Sabra08G0066200 Salix brachista HOM05D000442 ORTHO05D001979 8.5e-07 57.4 40 60.0
Sabra10G0126800 Salix brachista HOM05D000442 ORTHO05D001979 8.5e-07 57.4 40 57.5
TWI75G0379 Tripterygium wilfordii HOM05D000442 ORTHO05D001979 8.5e-07 57.4 39 64.1
Lj1g0018646 Lotus japonicus HOM05D000442 ORTHO05D001979 1.4e-06 56.6 37 73.0
Medtr7g011080 Medicago truncatula HOM05D000442 ORTHO05D001979 1.9e-06 56.2 56 48.2
Potri.008G088600 Populus trichocarpa HOM05D000442 ORTHO05D001979 1.9e-06 56.2 40 62.5
BcaB08g36908 Brassica carinata HOM05D000442 ORTHO05D001979 3.2e-06 55.5 37 70.3
CiPaw.04G015900 Carya illinoinensis HOM05D000442 ORTHO05D001979 3.2e-06 55.5 40 57.5
Cc11_g12790 Coffea canephora HOM05D000442 ORTHO05D001979 3.2e-06 55.5 39 61.5
Lalb_Chr02g0159291 Lupinus albus HOM05D000442 ORTHO05D001979 3.2e-06 55.5 39 59.0
Ca_04292_v3 Cicer arietinum L. HOM05D000442 ORTHO05D001979 4.2e-06 55.1 43 58.1
Haze_14509 Corylus avellana HOM05D000442 ORTHO05D001979 4.2e-06 55.1 40 57.5
Hma1.2p1_0750F.1_g212680 Hydrangea macrophylla HOM05D000442 ORTHO05D001979 4.2e-06 55.1 40 60.0
CiPaw.03G024900 Carya illinoinensis HOM05D000442 ORTHO05D001979 5.5e-06 54.7 40 60.0
DCAR_031004 Daucus carota HOM05D000442 ORTHO05D001979 5.5e-06 54.7 40 60.0
MBI02_g12269_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D001979 9.4e-06 53.9 41 53.7
Nn4g23214 Nelumbo nucifera HOM05D000442 ORTHO05D001979 9.4e-06 53.9 40 55.0
TPR.G33608 Trifolium pratense HOM05D000442 ORTHO05D001979 9.4e-06 53.9 40 62.5


User provided reference genes

Program Settings