Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 2008.4 1093 100.0
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1980.3 1099 98.5
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1930.6 1069 98.7
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1893.6 1093 95.1
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1888.2 1093 95.0
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1767.7 1092 88.0
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1759.6 1092 87.2
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1703.3 1092 86.2
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1702.6 1092 85.7
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1632.1 1092 83.2
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1549.3 1124 75.9
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1190.6 1091 60.4
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1171.4 1096 61.3
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1165.2 1094 56.4
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1157.5 1141 57.9
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1155.2 1097 59.8
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1149.8 1094 60.1
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1147.9 1101 58.4
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1147.9 1093 59.1
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1146.0 1093 60.0
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1140.6 1093 59.0
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1139.0 1099 57.5
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1135.6 1094 57.9
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1133.2 1096 55.7
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1127.5 1097 59.3
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1126.7 1103 58.0
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1125.5 1095 59.3
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1118.6 1097 56.4
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1117.8 1094 57.9
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1114.0 1095 59.0
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1113.2 1096 56.4
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1110.5 1102 54.6
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1110.1 1102 56.6
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 0.0e+00 1102.0 651 88.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1100.9 1108 54.2
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1099.7 1102 56.4
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1095.9 974 58.2
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1090.9 1095 54.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1090.1 1097 55.5
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1088.9 1096 55.8
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1088.2 1118 55.6
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1088.2 1094 54.8
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1087.8 1107 54.3
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1085.9 1105 54.1
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1084.7 1093 56.6
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1082.0 1091 56.1
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.5e-310 1069.7 1103 53.9
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 4.3e-310 1068.1 1091 55.6
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.4e-308 1062.4 1061 58.2
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 4.1e-308 1061.6 1106 57.3
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 9.0e-308 1060.4 1096 54.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 2.0e-307 1059.3 1057 55.5
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 2.2e-306 1055.8 1073 56.0
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 6.5e-306 1054.3 1091 54.0
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 2.5e-305 1052.4 1102 54.0
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 3.9e-303 1045.0 1098 54.6
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 2.6e-299 1032.3 1083 52.7
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 2.3e-295 1019.2 1095 53.1
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 6.7e-295 1017.7 1088 54.1
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 6.5e-290 1001.1 1093 53.8
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 9.4e-289 997.3 988 54.9
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 1.2e-288 996.9 1203 48.5
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.6e-288 996.5 1093 53.4
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 6.3e-285 984.6 1093 52.5
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.1e-284 983.8 1095 53.5
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 1.2e-283 980.3 1100 52.9
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 2.0e-283 979.5 1099 53.3
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 1.0e-282 977.2 1093 52.7
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.1e-280 969.5 1114 52.0
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 1.4e-279 966.8 1112 53.6
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 2.7e-275 952.6 1095 53.2
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 4.0e-271 938.7 1013 50.9
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 4.0e-271 938.7 1094 52.9
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.7e-267 926.0 1083 48.1
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 9.5e-265 917.5 979 51.5
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 5.2e-263 911.8 1088 50.6
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.7e-261 906.7 1095 50.0
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 1.1e-260 904.0 1118 49.0
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 3.1e-260 902.5 1089 46.3
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 1.2e-259 900.6 1182 48.5
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.7e-258 896.7 1100 47.5
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 6.2e-240 835.1 1107 48.9
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.6e-222 776.5 1108 46.0
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.6e-203 712.6 611 61.9
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 9.0e-199 698.4 717 54.3
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.6e-198 696.8 1113 41.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.8e-189 666.4 1106 39.9
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.8e-189 666.4 1106 39.9
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.8e-184 649.4 1135 39.1
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.3e-173 614.8 935 38.0
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.6e-171 606.7 442 80.5
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.0e-154 550.1 1064 33.1
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 6.8e-154 549.3 628 50.3
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 3.8e-149 533.5 504 53.4
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 8.6e-141 505.8 431 60.6
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.2e-114 416.8 430 50.5
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.4e-98 364.8 803 30.9
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.7e-94 351.3 468 40.6
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 7.9e-78 296.6 338 49.4
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.4e-74 285.8 441 46.0
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 9.0e-74 283.1 373 45.6
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 3.6e-70 271.2 217 93.5
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 3.3e-68 264.6 283 52.7
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 9.7e-68 263.1 407 44.2
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 3.6e-62 244.6 709 27.1
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.3e-60 238.0 221 50.7
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 3.7e-59 234.6 402 34.6
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 2.4e-58 231.9 904 25.7
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.5e-52 212.6 160 71.9
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 9.4e-47 193.4 664 27.3
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 2.1e-46 192.2 158 60.1
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 4.1e-34 151.4 212 46.2
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.0e-32 144.4 105 65.7
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.8e-29 136.0 91 68.1
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 8.9e-29 133.7 181 46.4
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.1e-26 126.7 138 50.0
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 3.3e-23 115.2 135 49.6
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.8e-22 112.1 119 44.5
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 8.9e-21 107.1 94 55.3
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.6e-20 105.5 111 51.4
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 9.8e-20 103.6 115 44.3
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.7e-19 101.7 122 42.6
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.2e-18 98.6 105 53.3
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-17 96.3 105 41.9
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.3e-16 93.2 135 43.7
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 7.3e-15 87.4 87 47.1
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.6e-14 86.3 89 47.2
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 1.6e-14 86.3 87 46.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 8.0e-14 84.0 125 36.0
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 2.0e-12 79.3 664 21.8
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 4.9e-11 74.7 163 53.4
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 4.9e-11 74.7 679 21.6
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.1e-10 73.6 125 33.6
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 4.1e-10 71.6 668 21.1
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 4.1e-10 71.6 707 21.2
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 6.0e-09 67.8 63 50.8
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 6.0e-09 67.8 48 58.3
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.0e-08 67.0 65 44.6
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.0e-08 67.0 359 22.0
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.0e-08 67.0 368 22.3
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 3.0e-08 65.5 673 19.8
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.9e-08 65.1 677 20.7
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 6.6e-08 64.3 528 21.6


User provided reference genes

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