Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.3e-222 776.2 403 100.0
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 8.2e-206 720.3 424 90.8
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 8.2e-206 720.3 424 90.8
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 1.5e-204 716.1 414 91.8
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 4.2e-202 708.0 403 92.6
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 7.7e-196 687.2 430 86.5
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 5.0e-187 657.9 428 83.4
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 1.5e-178 629.8 428 80.8
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 2.3e-176 622.5 428 79.2
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 4.0e-176 621.7 428 79.0
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.2e-175 620.2 428 78.7
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 1.4e-173 613.2 428 78.3
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 2.3e-160 569.3 461 69.6
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 2.4e-149 532.7 428 68.2
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 7.1e-117 424.9 429 55.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 1.2e-116 424.1 426 56.3
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 4.6e-116 422.2 433 55.2
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 1.7e-115 420.2 440 54.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 2.3e-115 419.9 429 56.6
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 3.0e-115 419.5 431 56.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 3.9e-115 419.1 430 56.3
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 1.9e-114 416.8 431 55.0
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.6e-114 415.2 435 54.9
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 1.6e-113 413.7 432 53.9
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 2.1e-113 413.3 431 54.8
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 2.1e-113 413.3 431 54.5
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 2.8e-113 412.9 431 55.0
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 8.1e-113 411.4 431 54.8
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 1.1e-112 411.0 433 54.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.4e-112 410.6 432 53.7
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.4e-112 410.6 432 53.7
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.4e-112 410.6 432 53.7
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.4e-112 410.6 432 53.7
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 1.4e-112 410.6 425 54.6
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 3.1e-112 409.5 438 54.8
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 4.0e-112 409.1 431 54.5
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 6.9e-112 408.3 435 54.3
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 2.0e-111 406.8 434 53.9
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 2.0e-111 406.8 415 55.2
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 3.4e-111 406.0 435 54.3
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 4.5e-111 405.6 432 53.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 4.5e-111 405.6 434 54.4
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 5.8e-111 405.2 431 54.5
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 7.6e-111 404.8 431 54.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 9.9e-111 404.4 433 53.8
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 9.9e-111 404.4 431 53.4
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 6.4e-110 401.7 427 54.3
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 1.2e-108 397.5 427 53.2
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 2.7e-108 396.4 435 53.6
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 4.6e-108 395.6 434 52.1
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 7.9e-108 394.8 429 52.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 1.0e-107 394.4 432 52.8
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 1.3e-107 394.0 436 53.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 1.3e-107 394.0 432 52.3
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 1.8e-107 393.7 428 53.3
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 3.9e-107 392.5 435 53.6
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 3.9e-107 392.5 429 52.4
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.1e-107 392.1 435 53.1
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 6.7e-107 391.7 435 53.6
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 8.7e-107 391.3 433 52.4
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 8.7e-107 391.3 433 52.9
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 8.7e-107 391.3 429 53.8
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 1.5e-106 390.6 434 53.2
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 2.5e-106 389.8 428 52.8
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 3.3e-106 389.4 436 52.5
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 3.3e-106 389.4 433 52.4
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 3.3e-106 389.4 428 52.6
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 7.4e-106 388.3 427 52.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 9.6e-106 387.9 427 53.2
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 1.3e-105 387.5 426 51.2
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 1.3e-105 387.5 433 52.2
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 1.6e-105 387.1 431 52.9
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 1.6e-105 387.1 425 51.5
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.1e-105 386.7 429 51.7
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.1e-105 386.7 429 51.7
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 8.1e-105 384.8 428 51.6
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 8.1e-105 384.8 429 52.0
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 1.4e-104 384.0 427 51.1
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 1.8e-104 383.6 426 51.6
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 6.9e-104 381.7 229 85.6
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 9.0e-104 381.3 493 47.3
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 2.6e-103 379.8 431 50.6
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 8.4e-102 374.8 430 52.1
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 2.4e-101 373.2 427 49.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 5.5e-101 372.1 437 51.5
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 5.5e-101 372.1 376 55.6
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 4.6e-100 369.0 442 50.5
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 6.7e-99 365.2 430 50.5
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 2.5e-98 363.2 427 50.6
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.3e-94 350.9 428 46.7
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 1.9e-90 337.0 432 46.1
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 5.7e-90 335.5 432 47.5
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 6.5e-86 322.0 434 45.9
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 8.5e-86 321.6 432 45.1
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.1e-82 311.2 385 48.1
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 5.0e-78 295.8 435 40.7
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 4.1e-64 249.6 319 45.8
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 2.0e-63 247.3 434 36.4
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.6e-63 246.9 428 36.0
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 4.2e-61 239.6 436 37.4
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 4.2e-61 239.6 436 37.4
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 6.1e-60 235.7 428 34.6
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.2e-57 225.3 214 54.2
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 5.0e-46 189.5 433 31.2
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 3.3e-37 160.2 200 48.0
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 8.9e-19 99.0 130 43.1
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 9.2e-16 89.0 272 27.9
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.2e-11 73.2 71 52.1


User provided reference genes

Program Settings