Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p48230 Brassica napus HOM05D034830 ORTHO05D019963 3.8e-60 234.6 112 100.0
BolC5t33559H Brassica oleracea HOM05D034830 ORTHO05D019963 2.4e-59 231.9 112 99.1
BcaC05g28722 Brassica carinata HOM05D000331 ORTHO05D019963 5.5e-27 124.4 61 98.4
BraA04t16534Z Brassica rapa HOM05D034830 ORTHO05D019963 2.2e-23 112.5 96 64.6
Sp1g13270 Schrenkiella parvula HOM05D000331 ORTHO05D000732 1.7e-15 86.3 45 86.7
BcaB08g34418 Brassica carinata HOM05D000331 ORTHO05D000732 2.8e-15 85.5 45 86.7
AL1G26850 Arabidopsis lyrata HOM05D000331 ORTHO05D000732 3.7e-15 85.1 45 86.7
AT1G14830 Arabidopsis thaliana HOM05D000331 ORTHO05D000732 3.7e-15 85.1 45 86.7
Carub.0001s1462 Capsella rubella HOM05D000331 ORTHO05D000732 3.7e-15 85.1 45 86.7
BcaB03g13080 Brassica carinata HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 86.7
BcaB08g34417 Brassica carinata HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 84.4
BcaC07g41536 Brassica carinata HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 84.4
A09p61770 Brassica napus HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 84.4
C08p45380 Brassica napus HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 84.4
BraA09t41547Z Brassica rapa HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 84.4
Thhalv10007102m.g Eutrema salsugineum HOM05D000331 ORTHO05D000732 4.8e-15 84.7 45 86.7
CARHR015370 Cardamine hirsuta HOM05D000331 ORTHO05D000732 6.3e-15 84.3 45 84.4
BcaC07g38763 Brassica carinata HOM05D000331 ORTHO05D000732 3.1e-14 82.0 45 84.4
A08p31800 Brassica napus HOM05D000331 ORTHO05D000732 3.1e-14 82.0 45 84.4
C08p16930 Brassica napus HOM05D000331 ORTHO05D000732 3.1e-14 82.0 45 84.4
BolC8t49320H Brassica oleracea HOM05D000331 ORTHO05D000732 3.1e-14 82.0 45 84.4
BraA08t35102Z Brassica rapa HOM05D000331 ORTHO05D000732 3.1e-14 82.0 45 84.4
BcaB02g06552 Brassica carinata HOM05D000331 ORTHO05D000732 5.3e-14 81.3 45 82.2
PGR142G1868 Punica granatum HOM05D000331 ORTHO05D000732 6.1e-10 67.8 45 71.1
TPR.G36883 Trifolium pratense HOM05D000331 ORTHO05D000732 1.4e-09 66.6 45 66.7
A07p01620 Brassica napus HOM05D000331 ORTHO05D019963 3.0e-09 65.5 35 85.7
C07p33310 Brassica napus HOM05D000672 ORTHO05D019963 3.0e-09 65.5 35 85.7
Potri.010G105900 Populus trichocarpa HOM05D000331 ORTHO05D000732 3.0e-09 65.5 45 68.9
A09p41650 Brassica napus HOM05D000672 ORTHO05D042374 4.0e-09 65.1 35 85.7
BraA09t37455Z Brassica rapa HOM05D000672 ORTHO05D042374 4.0e-09 65.1 35 85.7
Sabra10G0077500 Salix brachista HOM05D000331 ORTHO05D000732 8.8e-09 63.9 45 66.7
QL03p036039 Quercus lobata HOM05D000331 ORTHO05D000732 1.5e-08 63.2 46 73.9
THA.LOC104823660 Tarenaya hassleriana HOM05D000331 ORTHO05D000732 1.5e-08 63.2 46 71.7
BraA02t04846Z Brassica rapa HOM05D000672 ORTHO05D107778 2.0e-08 62.8 35 82.9
Cpa.g.c44606 Carica papaya HOM05D000331 ORTHO05D019963 4.4e-08 61.6 45 68.9
CiPaw.06G052500 Carya illinoinensis HOM05D000331 ORTHO05D000732 4.4e-08 61.6 45 68.9
Cfa015027 Carpinus fangiana HOM05D000331 ORTHO05D000732 7.5e-08 60.8 45 68.9
ClCG01G006590 Citrullus lanatus HOM05D000331 ORTHO05D000732 7.5e-08 60.8 45 68.9
Haze_10870 Corylus avellana HOM05D000331 ORTHO05D000732 7.5e-08 60.8 45 68.9
CsaV3_5G028210 Cucumis sativus L. HOM05D000331 ORTHO05D000732 7.5e-08 60.8 45 68.9
Lalb_Chr16g0387481 Lupinus albus HOM05D000331 ORTHO05D000732 7.5e-08 60.8 48 64.6
THA.LOC104824125 Tarenaya hassleriana HOM05D000331 ORTHO05D000732 7.5e-08 60.8 45 64.4
Phvul.002G321700 Phaseolus vulgaris HOM05D000331 ORTHO05D000732 1.3e-07 60.1 48 60.4
Actinidia38438 Actinidia chinensis HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 60.0
CSS0049871 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 60.0
CSS0050501 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 60.0
CiPaw.05G189100 Carya illinoinensis HOM05D000331 ORTHO05D011843 2.2e-07 59.3 45 64.4
MELO3C005255.2 Cucumis melo HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 68.9
Eucgr.G02102 Eucalyptus grandis HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 68.9
Nitab4.5_0000198g0130 Nicotiana tabacum HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 64.4
Nitab4.5_0006641g0020 Nicotiana tabacum HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 64.4
Sed0003170 Sechium edule HOM05D000331 ORTHO05D000732 2.2e-07 59.3 46 67.4
Sed0019472 Sechium edule HOM05D000331 ORTHO05D000732 2.2e-07 59.3 45 68.9
CANSAT01G2609 Cannabis sativa HOM05D000331 ORTHO05D000732 3.7e-07 58.5 45 68.9
Lj4g0008713 Lotus japonicus HOM05D000331 ORTHO05D000732 8.3e-07 57.4 49 59.2
Hund05291 Selenicereus undatus HOM05D000331 ORTHO05D000732 8.3e-07 57.4 45 57.8
Cc11_g07550 Coffea canephora HOM05D000331 ORTHO05D000732 1.1e-06 57.0 49 61.2
TWI53G1430 Tripterygium wilfordii HOM05D000331 ORTHO05D000732 1.1e-06 57.0 51 62.7
Ca_17272_v3 Cicer arietinum L. HOM05D000331 ORTHO05D000732 1.4e-06 56.6 49 61.2
Medtr1g032550 Medicago truncatula HOM05D000331 ORTHO05D000732 1.4e-06 56.6 46 58.7
AUR62034993 Chenopodium quinoa HOM05D000331 ORTHO05D000732 1.8e-06 56.2 45 62.2
AUR62037406 Chenopodium quinoa HOM05D000331 ORTHO05D000732 1.8e-06 56.2 45 62.2
PSO017G4018 Papaver somniferum HOM05D000331 ORTHO05D000732 1.8e-06 56.2 45 62.2
PSO384G1974 Papaver somniferum HOM05D000331 ORTHO05D000732 1.8e-06 56.2 45 62.2
Glyma.02G085700 Glycine max HOM05D000331 ORTHO05D000732 3.1e-06 55.5 46 60.9
Glyma.07G171000 Glycine max HOM05D000331 ORTHO05D000732 3.1e-06 55.5 46 60.9
Sc14g0006820 Simmondsia chinensis HOM05D000331 ORTHO05D000732 3.1e-06 55.5 45 62.2
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 4.1e-06 55.1 45 60.0
Dinv07721 Davidia involucrata HOM05D000331 ORTHO05D000732 5.4e-06 54.7 45 62.2
Dinv26350 Davidia involucrata HOM05D000331 ORTHO05D000732 5.4e-06 54.7 45 62.2
Peaxi162Scf00655g00120 Petunia axillaris HOM05D000331 ORTHO05D000732 7.0e-06 54.3 45 64.4
Psat6g046760 Pisum sativum HOM05D000331 ORTHO05D000732 7.0e-06 54.3 46 60.9
VMungo1215G3278 Vigna mungo HOM05D000331 ORTHO05D000732 7.0e-06 54.3 46 58.7
Glyma.05G239300 Glycine max HOM05D000331 ORTHO05D000732 9.1e-06 53.9 48 56.2
Glyma.08G046400 Glycine max HOM05D000331 ORTHO05D000732 9.1e-06 53.9 48 56.2


User provided reference genes

Program Settings