Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1409.0 695 100.0
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 0.0e+00 1110.5 844 70.9
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1109.4 844 70.7
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 0.0e+00 1083.2 842 69.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.3e-311 1071.2 840 69.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 7.6e-260 900.6 863 58.9
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.5e-236 821.6 865 55.5
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 6.5e-219 764.6 686 59.5
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.5e-210 736.9 684 58.2
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 2.3e-208 729.6 690 58.7
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 1.7e-203 713.4 685 57.1
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.5e-199 700.3 690 56.8
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.5e-194 683.7 701 54.8
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.2e-142 510.4 693 44.2
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 3.7e-137 493.0 338 75.4
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 2.1e-116 424.1 696 39.1
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 2.7e-116 423.7 674 39.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 2.2e-113 414.1 267 80.9
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.8e-113 412.9 709 38.8
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 1.8e-112 411.0 687 40.2
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 3.1e-112 410.2 691 39.1
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.9e-112 409.1 689 38.5
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.4e-109 401.4 536 42.5
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.6e-108 397.9 714 38.5
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.4e-107 394.8 689 37.6
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 6.7e-107 392.5 700 38.6
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 1.5e-106 391.3 696 37.5
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 9.7e-106 388.7 686 39.1
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 5.3e-104 382.9 670 39.4
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.6e-103 381.3 690 35.4
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 3.5e-103 380.2 282 68.8
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 3.5e-103 380.2 282 68.8
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 4.5e-103 379.8 667 36.3
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.0e-102 378.6 692 37.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-101 374.8 541 43.1
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 1.9e-101 374.4 572 39.7
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.9e-101 374.4 543 42.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.5e-101 374.0 695 36.3
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.2e-101 373.6 693 35.9
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.2e-101 373.6 693 35.9
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.2e-101 373.2 671 35.8
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.1e-100 369.4 543 39.6
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 8.0e-100 369.0 534 41.9
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 1.0e-99 368.6 238 80.7
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.0e-99 367.1 540 41.5
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 6.7e-99 365.9 548 40.1
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.6e-98 364.0 669 36.2
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.8e-97 359.8 660 36.7
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 4.1e-96 356.7 671 35.6
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 2.7e-95 354.0 703 36.1
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 2.7e-95 354.0 666 35.0
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 4.2e-93 346.7 707 35.9
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 3.6e-92 343.6 676 34.6
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 2.3e-91 340.9 686 34.7
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 3.4e-90 337.0 666 34.1
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 4.4e-90 336.7 693 34.2
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 6.3e-89 332.8 676 34.0
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.8e-88 331.3 192 84.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 2.7e-87 327.4 542 37.8
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 5.9e-87 326.2 662 33.1
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-86 325.1 693 35.5
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.7e-86 324.7 543 37.8
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.9e-86 323.9 573 36.6
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 1.1e-85 322.0 704 33.7
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.9e-85 321.2 515 36.7
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 2.5e-85 320.9 515 36.3
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 7.2e-85 319.3 705 33.2
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 1.6e-84 318.2 514 35.6
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 3.6e-84 317.0 705 32.9
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.0e-82 311.2 650 31.2
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.0e-82 311.2 516 35.9
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 3.4e-82 310.5 672 31.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 2.2e-81 307.8 683 32.5
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.4e-80 304.3 656 32.8
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 4.5e-79 300.1 688 33.1
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 3.8e-78 297.0 679 33.0
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 3.3e-77 293.9 669 31.7
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.8e-76 290.8 644 32.5
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.4e-75 288.5 640 32.7
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 2.3e-75 287.7 684 32.6
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 8.9e-75 285.8 575 34.4
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 5.7e-74 283.1 666 31.2
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.9e-73 280.0 513 35.1
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 5.4e-72 276.6 370 43.2
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 9.2e-72 275.8 629 33.1
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 7.8e-71 272.7 555 35.1
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 7.8e-71 272.7 547 33.5
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.0e-70 270.0 650 31.1
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 8.6e-70 269.2 547 32.9
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.6e-69 266.5 504 32.5
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.0e-67 260.4 653 30.3
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 5.8e-66 256.5 661 29.3
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.3e-62 244.6 609 30.2
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.3e-62 244.6 674 30.6
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 2.8e-60 237.7 342 40.6
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.1e-59 235.7 555 31.2
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 8.3e-57 226.1 596 31.0
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 9.2e-56 222.6 564 32.1
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.5e-55 220.7 524 32.1
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 4.0e-51 207.2 536 28.7
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 7.3e-45 186.4 658 27.5
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.8e-44 184.5 530 30.0
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.8e-43 181.8 469 31.8
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 8.9e-43 179.5 508 28.9
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.5e-42 178.7 529 28.2
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 5.8e-42 176.8 334 32.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.8e-41 174.1 414 30.7
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.6e-39 168.7 298 35.6
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 3.5e-39 167.5 247 40.1
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 7.8e-39 166.4 394 30.5
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.0e-38 166.0 239 43.9
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-37 162.2 522 27.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 4.3e-37 160.6 484 30.0
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 5.3e-35 153.7 498 27.7
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 3.4e-34 151.0 619 26.5
BcaB06g25878 Brassica carinata HOM05D004345 ORTHO05D005192 2.1e-31 141.7 84 83.3
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.0e-27 126.3 288 33.0
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-26 125.9 431 26.5
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 3.4e-26 124.4 74 82.4
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 4.5e-26 124.0 351 30.2
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 9.9e-26 122.9 202 38.1
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.9e-25 121.3 516 24.6
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 8.4e-25 119.8 104 58.7
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 4.2e-24 117.5 60 91.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.9e-21 108.6 281 29.5
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 3.7e-20 104.4 181 38.7
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.2e-20 103.2 256 31.2
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.2e-15 89.4 207 30.9
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-15 89.0 319 27.3
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.3e-13 80.9 487 23.6
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.1e-11 76.3 155 32.9
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.1e-11 76.3 155 32.9
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.1e-11 74.3 143 33.6
BolC5t33471H Brassica oleracea HOM05D004345 ORTHO05D005192 3.4e-10 71.2 94 51.1
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.7e-09 68.9 368 21.5
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.2e-07 62.8 96 36.5


User provided reference genes

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