Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 2.1e-64 248.8 121 100.0
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.2e-46 189.9 121 81.8
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 4.0e-31 138.3 68 95.6
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 8.3e-29 130.6 119 59.7
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 4.9e-13 78.2 37 97.3
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.4e-13 77.8 37 94.6
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 4.1e-12 75.1 37 94.6
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.2e-11 73.6 37 89.2
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-11 73.2 77 53.2
BcaC05g29806 Brassica carinata HOM05D000958 ORTHO05D000786 2.7e-11 72.4 46 84.8
C05p60920 Brassica napus HOM05D000958 ORTHO05D000786 2.7e-11 72.4 46 84.8
BolC5t34748H Brassica oleracea HOM05D000958 ORTHO05D000786 2.7e-11 72.4 46 84.8
BcaC05g30038 Brassica carinata HOM05D000958 ORTHO05D000786 4.6e-11 71.6 45 84.4
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 89.2
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 89.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 4.6e-11 71.6 37 91.9
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 6.0e-11 71.2 37 86.5
Aa31LG5G16830 Aethionema arabicum HOM05D000958 ORTHO05D000786 6.0e-11 71.2 44 81.8
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 6.0e-11 71.2 37 89.2
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 7.8e-11 70.9 37 89.2
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 7.8e-11 70.9 37 89.2
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 7.8e-11 70.9 37 91.9
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 7.8e-11 70.9 37 89.2
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 7.8e-11 70.9 37 89.2
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.0e-10 70.5 37 89.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.0e-10 70.5 37 89.2
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.3e-10 70.1 37 89.2
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.3e-10 70.1 37 89.2
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.3e-10 70.1 37 89.2
A05p41710 Brassica napus HOM05D000958 ORTHO05D000786 1.7e-10 69.7 47 85.1
BraA05t22890Z Brassica rapa HOM05D000958 ORTHO05D000786 1.7e-10 69.7 47 85.1
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.7e-10 69.7 37 89.2
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.7e-10 69.7 37 86.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.7e-10 69.7 37 86.5
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.7e-10 69.7 37 89.2
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.7e-10 69.7 37 89.2
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 89.2
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 86.5
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 86.5
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 86.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 86.5
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 89.2
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 83.8
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 89.2
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 2.3e-10 69.3 37 86.5
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 3.0e-10 68.9 37 86.5
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 3.0e-10 68.9 37 83.8
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 3.0e-10 68.9 37 86.5
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 3.0e-10 68.9 37 83.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 3.9e-10 68.6 37 83.8
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 3.9e-10 68.6 37 86.5
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.9e-10 68.6 37 83.8
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.9e-10 68.6 37 83.8
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 5.1e-10 68.2 37 86.5
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 5.1e-10 68.2 37 86.5
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 5.1e-10 68.2 37 83.8
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 5.1e-10 68.2 37 86.5
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 5.1e-10 68.2 37 86.5
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 86.5
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 83.8
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 83.8
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 86.5
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 86.5
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 6.6e-10 67.8 37 83.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 83.8
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 81.1
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 81.1
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 86.5
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 86.5
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 89.2
Sp3g05240 Schrenkiella parvula HOM05D000958 ORTHO05D000786 8.6e-10 67.4 44 79.5
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 78.4
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 8.6e-10 67.4 37 83.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 83.8
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 83.8
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 81.1
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 81.1
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 81.1
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 83.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 83.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.1e-09 67.0 37 83.8
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.5e-09 66.6 37 83.8
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.9e-09 66.2 37 81.1
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.9e-09 66.2 37 83.8
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.5e-09 65.9 37 78.4
BcaB04g21328 Brassica carinata HOM05D000958 ORTHO05D000786 3.3e-09 65.5 44 75.0
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 3.3e-09 65.5 37 83.8
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 4.3e-09 65.1 37 78.4
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 5.6e-09 64.7 37 83.8
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 5.6e-09 64.7 37 75.7
Carub.0003s0576 Capsella rubella HOM05D000958 ORTHO05D000786 1.2e-08 63.5 44 75.0
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 1.6e-08 63.2 37 75.7
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.6e-08 63.2 37 78.4
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 1.6e-08 63.2 37 75.7
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.6e-08 63.2 37 78.4
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.1e-08 62.8 37 75.7
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.1e-08 62.8 37 73.0
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 4.7e-08 61.6 37 70.3
AL3G17260 Arabidopsis lyrata HOM05D000958 ORTHO05D000786 4.0e-07 58.5 44 72.7
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 5.2e-07 58.2 37 73.0
BcaB03g14670 Brassica carinata HOM05D000958 ORTHO05D000786 4.4e-06 55.1 44 68.2
CARHR080850 Cardamine hirsuta HOM05D000958 ORTHO05D000786 5.8e-06 54.7 47 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 7.6e-06 54.3 33 66.7


User provided reference genes

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