Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3680.2 1881 100.0
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 3664.4 1881 99.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3662.1 1881 99.6
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 3610.1 1882 98.1
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3595.8 1883 97.6
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3333.5 1886 90.8
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 3176.3 1895 85.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 3152.5 1900 85.1
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 3047.7 1901 82.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 3036.5 1905 82.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 3017.3 1902 81.9
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 3009.6 1903 81.9
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 2860.5 1905 77.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 2511.5 1924 69.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1715.3 1956 50.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1700.6 1992 49.8
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1694.1 2013 49.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1694.1 2014 49.0
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1689.5 2010 48.8
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1679.1 2049 48.3
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1674.1 2002 48.8
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1672.1 2004 49.1
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1670.2 2015 48.1
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1669.1 1986 49.4
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1667.9 2013 48.9
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1667.5 1997 49.2
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1666.4 2022 49.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1664.8 2024 48.9
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 2010 48.3
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1654.0 2026 48.5
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1645.6 2015 48.4
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1629.0 1979 48.5
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1622.8 2028 47.1
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1620.9 1999 47.8
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1617.8 2016 47.5
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1615.1 2042 47.4
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1612.8 2000 48.0
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1604.7 2034 47.4
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1587.8 2018 46.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1584.7 2013 47.6
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1584.3 2036 46.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1581.6 2017 46.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1578.9 2026 46.4
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1562.4 2008 46.3
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1560.0 1980 47.0
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1558.1 2009 46.2
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1557.0 2034 45.9
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1551.6 2033 46.4
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1543.5 2009 46.0
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1541.2 2017 45.8
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1525.4 1993 45.9
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1525.0 2000 45.6
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1523.5 2003 45.5
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1508.4 2004 45.4
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1506.9 1987 45.2
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1503.8 1993 45.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1497.6 2049 44.4
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 1992 45.5
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1490.7 1992 44.8
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1487.2 2016 44.6
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1483.0 2035 45.3
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1481.8 1987 45.0
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1473.8 2013 45.3
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1453.7 2003 44.6
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1430.2 2019 43.6
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1424.8 1998 43.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1420.2 2008 43.8
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1413.7 2030 42.7
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1413.7 2005 43.2
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1401.3 1913 44.4
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1397.9 2039 43.3
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1396.3 2023 43.2
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1392.5 2023 43.2
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1389.0 1924 44.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1386.7 1922 44.2
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1385.5 2021 42.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1358.2 1886 43.3
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1355.5 2059 42.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1351.7 2003 41.8
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1345.9 2009 41.6
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1333.5 1896 42.6
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1323.9 2132 40.1
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1322.8 1936 43.0
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1301.2 1916 42.3
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1272.7 2005 41.5
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1241.5 1934 41.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1221.1 1718 43.5
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1208.7 1458 48.1
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1208.4 1720 43.5
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1201.0 1462 47.9
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1169.5 1962 39.7
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1145.2 2074 37.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1143.3 1780 41.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 9.1e-308 1061.2 1730 39.4
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 7.5e-294 1015.0 1976 34.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 3.5e-259 899.8 2108 32.8
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 2.6e-254 883.6 1650 37.6
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.7e-250 870.9 1168 45.2
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 8.4e-229 798.9 1454 36.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 3.2e-228 797.0 2155 31.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.2e-221 774.2 1652 33.5
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 8.5e-197 692.6 2057 28.8
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 4.8e-184 650.2 1939 29.7
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 2.3e-173 614.8 677 52.1
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.1e-159 569.3 1804 27.5
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 2.9e-144 518.1 1671 27.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 4.6e-142 510.8 1172 33.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.9e-136 490.7 439 58.3
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.9e-130 470.3 393 59.0
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.3e-123 449.5 348 67.2
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 3.7e-115 421.4 379 54.1
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 4.8e-107 394.4 288 68.4
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.9e-101 374.8 352 56.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.3e-98 364.4 435 49.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.7e-96 359.4 274 65.3
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 8.8e-85 320.5 1099 27.2
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.2e-73 283.5 198 68.7
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 2.7e-65 255.8 244 59.0
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.6e-62 246.5 365 39.2
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 4.7e-62 245.0 496 36.9
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 7.0e-50 204.5 217 54.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.8e-45 189.9 179 54.2
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 2.2e-43 183.0 494 27.9
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 8.6e-40 171.0 183 52.5
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.9e-35 156.0 297 36.7
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.9e-35 155.2 173 50.9
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.9e-27 128.6 213 36.6
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.1e-26 127.5 83 67.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-26 126.3 599 24.2
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 4.7e-22 112.1 392 25.8
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 4.0e-21 109.0 53 100.0
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 9.9e-20 104.4 257 29.2
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 8.4e-19 101.3 59 83.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-17 97.4 105 46.7
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.2e-17 97.4 71 70.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.6e-17 95.5 68 67.6
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 5.1e-16 92.0 62 71.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.3e-15 89.4 99 45.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.6e-14 87.0 126 41.3
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.0e-13 82.4 57 71.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 9.6e-07 61.2 55 52.7
Migut.B00337 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.2e-06 58.5 83 43.4


User provided reference genes

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