Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-32 142.1 74 100.0
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 7.1e-31 136.7 73 95.9
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-30 136.0 73 95.9
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 9.0e-18 93.2 49 93.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 9.0e-18 93.2 49 93.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 7.1e-15 83.6 47 83.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 6.0e-14 80.5 47 80.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 6.0e-14 80.5 47 80.9
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 3.3e-12 74.7 43 81.4
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 3.3e-12 74.7 43 81.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.3e-12 74.7 43 81.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.3e-12 74.7 47 74.5
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 4.3e-12 74.3 49 69.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.3e-11 72.8 49 67.3
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.6e-11 72.4 47 72.3
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.1e-11 72.0 44 75.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-11 72.0 55 65.5
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-11 72.0 55 65.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-11 72.0 55 65.5
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.1e-11 72.0 55 65.5
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.1e-11 72.0 47 72.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.7e-11 71.2 47 70.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.7e-11 71.2 49 69.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 8.1e-11 70.1 49 67.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.1e-11 70.1 49 67.3
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 8.1e-11 70.1 49 67.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 8.1e-11 70.1 49 67.3
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.1e-10 69.7 47 70.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-10 69.7 49 67.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.1e-10 69.7 49 67.3
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-10 69.7 49 67.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-10 69.7 49 67.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.4e-10 69.3 48 68.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.8e-10 68.9 49 67.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.8e-10 68.9 47 70.2
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.4e-10 68.6 52 69.2
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.4e-10 68.6 49 67.3
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.4e-10 68.6 49 67.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.4e-10 68.6 49 67.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 2.4e-10 68.6 49 65.3
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.1e-10 68.2 49 65.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.1e-10 68.2 49 65.3
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 3.1e-10 68.2 49 67.3
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 3.1e-10 68.2 49 65.3
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.0e-10 67.8 49 65.3
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 5.3e-10 67.4 49 65.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.3e-10 67.4 49 65.3
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.3e-10 67.4 48 66.7
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 6.9e-10 67.0 48 70.8
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 6.9e-10 67.0 49 65.3
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.9e-10 67.0 49 63.3
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.0e-10 66.6 49 65.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.0e-10 66.6 49 65.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 9.0e-10 66.6 49 65.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.2e-09 66.2 48 66.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.2e-09 66.2 47 66.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.5e-09 65.9 48 66.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.5e-09 65.9 49 65.3
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-09 65.9 49 63.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-09 65.9 49 61.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.5e-09 65.9 49 63.3
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.5e-09 65.9 50 66.0
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.5e-09 65.9 47 68.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.0e-09 65.5 49 61.2
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-09 65.1 46 65.2
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.6e-09 65.1 49 63.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 2.6e-09 65.1 44 68.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-09 64.7 49 59.2
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-09 64.7 49 59.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-09 64.7 49 59.2
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-09 64.7 49 59.2
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.4e-09 64.7 47 63.8
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.5e-09 64.3 49 59.2
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.8e-09 63.9 49 63.3
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.8e-09 63.9 49 63.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.8e-09 63.9 49 63.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.8e-09 63.9 49 61.2
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 5.8e-09 63.9 49 63.3
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 7.6e-09 63.5 48 62.5
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 7.6e-09 63.5 49 61.2
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-08 63.2 49 61.2
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.3e-08 62.8 50 60.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.3e-08 62.8 49 61.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.3e-08 62.8 40 72.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.3e-08 62.8 40 75.0
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.7e-08 62.4 47 61.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.7e-08 62.4 49 61.2
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-08 62.4 49 61.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.7e-08 62.4 49 61.2
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.2e-08 62.0 49 61.2
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.2e-08 62.0 49 59.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.2e-08 62.0 47 61.7
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.2e-08 62.0 49 59.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.2e-08 62.0 40 72.5
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.9e-08 61.6 50 64.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 4.9e-08 60.8 49 57.1
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 6.5e-08 60.5 47 59.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 6.5e-08 60.5 49 59.2
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 8.4e-08 60.1 47 59.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.1e-07 59.7 42 71.4
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.1e-07 59.7 42 64.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 1.1e-07 59.7 48 56.2
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-07 59.7 51 60.8
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.4e-07 59.3 47 59.6
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.4e-07 59.3 40 70.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-07 59.3 49 57.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-07 59.3 46 63.0
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.9e-07 58.9 44 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.5e-07 58.5 44 61.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.5e-07 58.5 51 58.8
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.2e-07 58.2 42 64.3
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.2e-07 57.8 58 55.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 5.5e-07 57.4 44 61.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 5.5e-07 57.4 44 61.4
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 5.5e-07 57.4 46 60.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 7.1e-07 57.0 49 59.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-06 56.2 35 77.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-06 56.2 48 56.2
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-06 56.2 40 65.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.6e-06 55.8 49 51.0
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-06 55.8 47 53.2
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 3.5e-06 54.7 53 50.9


User provided reference genes

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