Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 7.2e-256 886.7 441 100.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.4e-144 515.4 293 88.4
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.4e-144 515.4 293 88.4
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 2.2e-143 513.1 397 70.8
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.4e-142 509.6 295 86.1
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 7.0e-142 508.1 294 86.1
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 7.0e-142 508.1 294 86.1
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.0e-141 506.5 294 85.4
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.0e-141 506.5 294 85.4
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 4.7e-138 495.4 296 83.8
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 4.7e-138 495.4 295 83.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 8.3e-135 484.6 290 83.1
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.8e-134 483.4 291 81.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 4.5e-133 478.8 291 80.4
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.7e-132 476.9 290 80.7
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.1e-131 474.2 295 79.7
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.9e-131 473.4 296 77.7
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.3e-127 460.7 310 79.4
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 6.6e-124 448.4 290 76.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.3e-123 446.0 269 85.1
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.2e-122 444.1 260 86.9
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.1e-115 421.0 262 80.2
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 2.1e-114 416.8 295 68.5
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-114 416.4 295 68.1
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.8e-113 413.7 295 67.5
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.0e-113 412.5 291 68.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 4.0e-113 412.5 291 68.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 4.0e-113 412.5 299 67.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.0e-112 410.2 295 67.8
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.4e-112 409.5 295 67.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 7.5e-112 408.3 295 67.1
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 9.8e-112 407.9 295 66.8
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.3e-111 407.5 298 66.1
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.9e-111 406.4 294 67.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.9e-110 403.7 298 65.4
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.4e-110 403.3 294 67.3
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.4e-110 403.3 296 67.9
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.1e-110 402.5 290 66.2
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.1e-110 402.5 299 66.9
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 5.4e-110 402.1 298 65.4
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 5.4e-110 402.1 297 65.3
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.5e-109 399.4 295 66.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.5e-109 399.4 298 65.1
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 6.0e-109 398.7 296 66.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 7.8e-109 398.3 299 66.6
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 1.0e-108 397.9 299 66.6
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.0e-108 397.9 297 65.7
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.0e-108 397.9 295 66.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.3e-108 397.5 294 66.7
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 1.3e-108 397.5 291 66.0
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.3e-108 397.5 302 65.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.3e-108 396.7 295 66.4
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 3.0e-108 396.4 293 66.2
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.0e-108 395.6 294 66.3
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.6e-108 395.2 299 65.6
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 8.6e-108 394.8 299 66.2
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.1e-107 394.4 292 65.4
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.5e-107 394.0 291 66.0
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.5e-107 394.0 302 63.2
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 1.5e-107 394.0 296 65.2
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.9e-107 393.7 293 65.9
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 2.5e-107 393.3 295 66.1
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 3.3e-107 392.9 290 65.9
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.6e-107 392.1 297 65.3
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 9.5e-107 391.3 294 64.3
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.2e-106 391.0 295 65.4
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.6e-106 390.6 303 64.4
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 2.1e-106 390.2 334 60.2
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.8e-106 389.8 294 69.4
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.8e-106 389.8 293 65.2
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 2.8e-106 389.8 331 60.1
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 2.8e-106 389.8 295 65.1
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.6e-106 389.4 295 64.4
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 4.7e-106 389.0 291 65.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.4e-105 387.5 291 65.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.8e-105 387.1 295 65.1
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.8e-105 387.1 324 61.4
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.8e-105 387.1 295 64.1
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 2.3e-105 386.7 295 64.1
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.0e-105 386.0 299 64.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 6.8e-105 385.2 283 71.0
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 6.8e-105 385.2 290 65.2
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.2e-104 384.4 299 64.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.5e-104 384.0 297 63.6
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.6e-104 383.3 295 63.4
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.6e-104 383.3 286 66.1
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.4e-104 382.5 294 63.9
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 4.4e-104 382.5 293 63.8
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 7.5e-104 381.7 319 59.9
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 9.8e-104 381.3 297 63.0
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.3e-103 380.9 299 63.5
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.7e-103 380.6 299 63.5
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 1.7e-103 380.6 312 62.2
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.7e-103 379.4 296 62.5
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 3.7e-103 379.4 293 64.5
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 8.3e-103 378.3 294 64.6
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 8.3e-103 378.3 298 63.1
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.9e-102 377.1 291 66.3
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.4e-102 376.7 290 64.5
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 9.2e-102 374.8 296 62.5
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.5e-101 372.9 309 60.2
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 6.0e-101 372.1 295 63.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.0e-100 371.3 309 60.8
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 3.0e-100 369.8 299 61.9
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 6.6e-100 368.6 296 62.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 4.3e-99 365.9 275 67.3
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.6e-98 364.0 298 60.7
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.1e-98 361.7 298 59.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 8.1e-98 361.7 295 60.0
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 3.4e-96 356.3 276 65.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.9e-95 352.4 256 66.4
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.1e-94 349.4 303 58.7
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-92 344.0 295 60.0
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.7e-84 317.4 294 55.8
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 1.9e-83 313.9 293 53.2
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.6e-83 311.6 283 57.2
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.6e-82 309.7 271 60.9
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.0e-81 305.1 208 68.8
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.4e-78 297.7 309 49.2
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.7e-76 290.8 294 52.4
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 4.2e-70 269.6 298 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 9.3e-70 268.5 322 45.0
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 3.2e-62 243.4 314 43.3
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 4.6e-45 186.4 110 78.2
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 3.2e-38 163.7 154 52.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.7e-34 151.4 297 33.3
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.8e-33 147.9 230 38.3
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 4.0e-28 130.2 74 87.8
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 4.8e-26 123.2 225 37.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.7e-18 98.2 60 66.7
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.7e-15 88.2 142 38.0
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.9e-15 87.4 99 54.5
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.7e-13 80.9 60 58.3
BraA09t38723Z Brassica rapa HOM05D020542 ORTHO05D107908 2.6e-11 74.3 109 42.2
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.4e-11 73.6 101 48.5
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 4.4e-11 73.6 101 48.5
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 5.7e-11 73.2 101 47.5
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 5.7e-11 73.2 101 47.5
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 9.8e-11 72.4 40 87.5
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.3e-10 72.0 73 60.3
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.9e-10 70.1 101 46.5
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 6.3e-10 69.7 73 60.3
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 6.3e-10 69.7 101 46.5
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 1.8e-09 68.2 84 42.9
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.4e-09 67.8 101 45.5
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 7.7e-08 62.8 41 73.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 4.3e-06 57.0 51 54.9


User provided reference genes

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