Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.8e-234 815.5 396 100.0
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 3.2e-223 778.1 421 91.2
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 3.2e-223 778.1 421 91.2
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.4e-218 761.9 419 89.0
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 3.1e-218 761.5 419 89.3
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 6.5e-216 753.8 421 87.4
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 8.0e-206 720.3 426 83.6
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.0e-205 719.9 426 82.9
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.0e-204 715.7 426 81.9
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 5.8e-204 714.1 426 82.4
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 9.8e-204 713.4 426 81.7
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.7e-203 712.6 428 82.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 3.7e-203 711.4 428 82.5
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 8.3e-203 710.3 428 82.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.6e-201 706.1 427 81.3
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 2.0e-201 705.7 417 82.7
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 3.5e-201 704.9 425 82.6
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 4.3e-199 698.0 417 81.8
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 9.8e-196 686.8 424 78.5
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.1e-177 625.9 419 73.0
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 5.6e-167 591.3 414 68.8
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 2.8e-166 589.0 416 69.2
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 2.8e-166 589.0 416 69.2
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 6.9e-165 584.3 414 69.8
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 9.0e-165 583.9 427 66.5
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.6e-164 582.4 412 68.7
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 3.4e-164 582.0 414 68.6
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 3.4e-164 582.0 414 68.1
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 4.5e-164 581.6 413 69.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 5.8e-164 581.3 414 69.8
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 5.8e-164 581.3 414 67.9
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 7.6e-164 580.9 416 67.5
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 9.9e-164 580.5 414 68.1
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 6.4e-163 577.8 414 66.9
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 6.4e-163 577.8 414 68.1
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.4e-163 577.4 414 67.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 3.2e-162 575.5 415 68.4
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 7.1e-162 574.3 418 67.9
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.2e-161 573.5 414 66.2
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 1.6e-161 573.2 418 65.6
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.3e-160 570.1 415 65.8
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 5.1e-160 568.2 414 67.6
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 2.5e-159 565.8 414 66.2
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 4.3e-159 565.1 414 66.4
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 7.4e-159 564.3 412 68.0
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.6e-159 563.9 414 65.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.3e-158 563.5 404 67.8
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 2.8e-158 562.4 414 65.5
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 4.8e-158 561.6 415 66.7
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 1.1e-157 560.5 421 65.6
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 1.4e-157 560.1 415 66.3
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 3.1e-157 558.9 416 67.3
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.1e-157 558.9 421 66.5
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 4.0e-157 558.5 434 63.6
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 2.6e-156 555.8 412 65.8
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.6e-156 555.8 417 64.3
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.4e-156 555.4 419 64.9
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.4e-156 555.4 419 64.7
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 4.5e-156 555.1 414 65.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 4.5e-156 555.1 415 65.3
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 4.5e-156 555.1 413 66.1
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.7e-155 553.1 415 65.5
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 4.9e-155 551.6 414 66.2
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.1e-154 550.4 410 64.6
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.1e-154 550.4 413 65.9
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 1.1e-154 550.4 421 63.9
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.4e-154 549.3 414 65.9
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.2e-154 548.9 414 63.3
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 3.2e-154 548.9 414 64.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 9.3e-154 547.4 426 64.6
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.2e-153 547.0 414 64.0
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.6e-153 546.6 415 63.6
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 4.6e-153 545.0 414 63.3
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 6.0e-153 544.7 415 62.9
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 8.7e-152 540.8 439 62.4
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 4.3e-151 538.5 418 64.6
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 5.6e-151 538.1 404 67.3
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 7.4e-151 537.7 414 62.3
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 7.4e-151 537.7 421 64.1
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 9.6e-151 537.3 416 63.7
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 9.6e-151 537.3 419 63.5
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.3e-147 526.9 416 63.2
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 2.9e-147 525.8 418 64.4
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.1e-146 523.9 407 61.2
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.2e-146 521.9 414 60.1
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.2e-146 521.9 414 60.1
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 7.1e-146 521.2 414 60.6
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 9.3e-146 520.8 414 63.3
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 9.3e-146 520.8 414 63.3
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.1e-145 519.6 417 61.4
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 3.9e-144 515.4 405 62.0
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.5e-143 512.7 415 61.4
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.3e-143 511.9 419 63.2
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 5.7e-143 511.5 419 61.8
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.6e-142 510.0 418 61.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.6e-142 510.0 405 61.7
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.2e-142 509.6 419 59.7
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 2.2e-142 509.6 414 60.4
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 6.3e-142 508.1 416 62.3
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 6.9e-141 504.6 417 60.9
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 9.0e-141 504.2 415 60.5
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.6e-140 502.7 416 59.1
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.7e-139 500.0 397 61.7
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 6.1e-137 491.5 420 60.2
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.9e-136 488.8 412 56.6
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.4e-135 484.6 420 57.9
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 6.9e-133 478.0 414 56.0
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 8.5e-131 471.1 414 53.4
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 3.6e-129 465.7 414 52.7
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 6.1e-129 464.9 411 56.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.8e-128 463.4 405 57.3
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.7e-126 456.8 418 56.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.4e-125 453.8 358 64.8
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.4e-125 453.0 413 53.5
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.6e-124 449.5 413 53.8
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.5e-123 444.5 395 54.2
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.7e-118 430.3 416 52.2
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.1e-117 424.5 447 48.1
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 4.4e-111 405.6 290 66.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 2.2e-110 403.3 381 56.2
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 4.8e-110 402.1 293 68.9
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.7e-107 393.7 389 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 8.8e-104 381.3 443 45.8
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.2e-94 350.1 255 65.5
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 2.8e-94 349.7 399 45.9
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 1.6e-92 344.0 402 44.0
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.7e-92 343.2 420 41.2
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.6e-89 332.8 350 47.1
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 6.8e-88 328.6 414 45.9
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 3.5e-84 316.2 239 65.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 6.6e-83 312.0 227 67.0
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.2e-80 302.4 397 40.8
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 6.4e-78 295.4 423 39.2
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 3.5e-68 263.1 244 57.8
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-59 234.2 146 79.5
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 9.0e-56 221.9 158 74.1
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 5.4e-53 212.6 158 67.1
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.5e-47 193.0 139 61.9
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.1e-44 184.1 265 38.9
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 8.7e-43 178.7 132 59.8
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 7.4e-42 175.6 161 55.3
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.0e-38 165.2 114 65.8
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-38 164.9 100 82.0
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.6e-33 147.9 92 81.5
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 6.9e-32 142.5 129 62.0
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.0e-32 142.1 138 55.1
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.5e-31 139.8 79 84.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-30 136.7 78 82.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.3e-26 123.2 382 27.0
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 4.8e-25 119.8 67 83.6
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.5e-21 107.5 67 73.1
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.8e-19 101.3 150 40.7
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 8.8e-19 99.0 62 79.0
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 4.3e-18 96.7 60 73.3
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 9.7e-18 95.5 91 51.6
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-15 88.6 58 81.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.4e-15 87.0 84 51.2
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 5.9e-15 86.3 55 81.8
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.2e-13 80.5 68 50.0
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 2.7e-12 77.4 73 53.4
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 1.8e-11 74.7 51 76.5
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 1.7e-09 68.2 45 71.1
C06p51380 Brassica napus HOM05D004203 ORTHO05D004830 2.8e-09 67.4 43 81.4
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.5e-07 61.6 39 64.1


User provided reference genes

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