Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p43780 Brassica napus HOM05D006629 ORTHO05D008430 1.1e-22 109.0 51 100.0
BcaC01g01330 Brassica carinata HOM05D006629 ORTHO05D008430 9.6e-11 69.3 37 86.5
A08p02130 Brassica napus HOM05D006629 ORTHO05D008430 9.6e-11 69.3 37 86.5
BolC3t21390H Brassica oleracea HOM05D006629 ORTHO05D008430 9.6e-11 69.3 37 86.5
BraA08t32260Z Brassica rapa HOM05D006629 ORTHO05D008430 9.6e-11 69.3 37 86.5
BcaB04g17151 Brassica carinata HOM05D006629 ORTHO05D008430 4.8e-10 67.0 37 83.8
Aa31LG10G2420 Aethionema arabicum HOM05D006629 ORTHO05D008430 8.1e-10 66.2 37 83.8
AL1G60870 Arabidopsis lyrata HOM05D006629 ORTHO05D008430 8.1e-10 66.2 37 83.8
C03p90690 Brassica napus HOM05D006629 ORTHO05D008430 8.1e-10 66.2 37 83.8
CARHR042720 Cardamine hirsuta HOM05D006629 ORTHO05D008430 8.1e-10 66.2 37 83.8
Sp1g39150 Schrenkiella parvula HOM05D006629 ORTHO05D008430 8.1e-10 66.2 37 83.8
AT1G52590 Arabidopsis thaliana HOM05D006629 ORTHO05D008430 1.8e-09 65.1 37 81.1
Carub.0001s4159 Capsella rubella HOM05D006629 ORTHO05D008430 1.8e-09 65.1 37 81.1
Thhalv10011823m.g Eutrema salsugineum HOM05D006629 ORTHO05D008430 4.0e-09 63.9 37 81.1
THA.LOC104818030 Tarenaya hassleriana HOM05D006629 ORTHO05D008430 6.9e-09 63.2 37 78.4
MSTRG.11130 Avicennia marina HOM05D006629 ORTHO05D008430 1.5e-08 62.0 37 78.4
MD00G1022200 Malus domestica HOM05D006629 ORTHO05D008430 2.6e-08 61.2 37 78.4
EL10Ac9g21916 Beta vulgaris HOM05D006629 ORTHO05D008430 4.4e-08 60.5 37 73.0
GSVIVG01017300001 Vitis vinifera HOM05D006629 ORTHO05D008430 4.4e-08 60.5 37 75.7
FAN02G3434 Fragaria x ananassa HOM05D006629 ORTHO05D008430 7.6e-08 59.7 37 75.7
Rhsim08G0214800 Rhododendron simsii HOM05D006629 ORTHO05D008430 7.6e-08 59.7 37 75.7
Prupe.3G083500 Prunus persica HOM05D006629 ORTHO05D008430 9.9e-08 59.3 37 75.7
QL05p028345 Quercus lobata HOM05D006629 ORTHO05D008430 9.9e-08 59.3 37 75.7
Hund00536 Selenicereus undatus HOM05D006629 ORTHO05D008430 9.9e-08 59.3 37 73.0
COL.COLO4_12927 Corchorus olitorius HOM05D006629 ORTHO05D008430 1.3e-07 58.9 37 75.7
Actinidia15782 Actinidia chinensis HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 73.0
Ah.01g020720 Amaranthus hybridus HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 73.0
FvH4_6g30000 Fragaria vesca HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 73.0
FAN14G1255 Fragaria x ananassa HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 73.0
MBI01_g47382_MAGBIO Magnolia biondii HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 67.6
Sabra08G0150000 Salix brachista HOM05D006629 ORTHO05D008430 1.7e-07 58.5 37 73.0
RcHm_v2.0_Chr2g0136021 Rosa chinensis HOM05D006629 ORTHO05D008430 2.2e-07 58.2 37 73.0
SGA_v2.0_scaffold5G02676 Striga asiatica HOM05D006629 ORTHO05D008430 2.2e-07 58.2 37 73.0
TAR383G1031 Trochodendron aralioides HOM05D006629 ORTHO05D008430 2.2e-07 58.2 37 73.0
CSS0009902 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 2.9e-07 57.8 37 73.0
CSS0049498 Camellia sinensis var. sinensis HOM05D006629 ORTHO05D008430 2.9e-07 57.8 37 73.0
Thecc.06G069100 Theobroma cacao HOM05D006629 ORTHO05D008430 2.9e-07 57.8 37 73.0
Migut.I00787 Erythranthe guttata HOM05D006629 ORTHO05D008430 3.8e-07 57.4 37 73.0
Manes.04G115000 Manihot esculenta HOM05D006629 ORTHO05D008430 3.8e-07 57.4 37 70.3
TWI18G0931 Tripterygium wilfordii HOM05D006629 ORTHO05D008430 3.8e-07 57.4 37 70.3
unitig_52.g17452 Utricularia gibba HOM05D006629 ORTHO05D008430 3.8e-07 57.4 37 70.3
Cpa.g.sc10.240 Carica papaya HOM05D006629 ORTHO05D008430 4.9e-07 57.0 35 77.1
Lj5C70G0 Lonicera japonica HOM05D006629 ORTHO05D008430 4.9e-07 57.0 37 70.3
Potri.008G213200 Populus trichocarpa HOM05D006629 ORTHO05D008430 4.9e-07 57.0 37 70.3
Ciclev10026597m.g Citrus clementina HOM05D006629 ORTHO05D008430 6.4e-07 56.6 37 70.3
DCAR_025501 Daucus carota HOM05D006629 ORTHO05D008430 6.4e-07 56.6 37 70.3
Medtr2g103590 Medicago truncatula HOM05D006629 ORTHO05D008430 6.4e-07 56.6 37 70.3
ClCG07G012710 Citrullus lanatus HOM05D006629 ORTHO05D008430 8.4e-07 56.2 37 70.3
Sed0005686 Sechium edule HOM05D006629 ORTHO05D008430 8.4e-07 56.2 37 70.3
Atru.chr1.3007 Acer truncatum HOM05D006629 ORTHO05D008430 1.1e-06 55.8 37 70.3
Gohir.A06G186400 Gossypium hirsutum HOM05D006629 ORTHO05D008430 1.1e-06 55.8 37 70.3
Gohir.D06G192700 Gossypium hirsutum HOM05D006629 ORTHO05D008430 1.1e-06 55.8 37 70.3
Gorai.010G226500 Gossypium raimondii HOM05D006629 ORTHO05D008430 1.1e-06 55.8 37 70.3
CiPaw.01G246000 Carya illinoinensis HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 70.3
Haze_16533 Corylus avellana HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 70.3
MELO3C017890.2 Cucumis melo HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 70.3
CsaV3_4G001490 Cucumis sativus L. HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 70.3
Psat5g301760 Pisum sativum HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 67.6
TPR.G37207 Trifolium pratense HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 67.6
VMungo1080G1280 Vigna mungo HOM05D006629 ORTHO05D008430 1.4e-06 55.5 37 67.6
Dinv30585 Davidia involucrata HOM05D006629 ORTHO05D008430 1.9e-06 55.1 37 70.3
ECA234G2539 Erigeron canadensis HOM05D006629 ORTHO05D008430 1.9e-06 55.1 37 70.3
HanXRQChr12g0361441 Helianthus annuus HOM05D006629 ORTHO05D008430 1.9e-06 55.1 37 70.3
SalBow2G3434 Salvia bowleyana HOM05D006629 ORTHO05D008430 1.9e-06 55.1 37 67.6
Sc23g0006680 Simmondsia chinensis HOM05D006629 ORTHO05D008430 1.9e-06 55.1 37 67.6
Hma1.2p1_0042F.1_g025470 Hydrangea macrophylla HOM05D006629 ORTHO05D008430 2.4e-06 54.7 37 67.6
PGR102G3125 Punica granatum HOM05D006629 ORTHO05D008430 2.4e-06 54.7 37 67.6
Aqoxy7G03710 Aquilegia oxysepala HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Eucgr.F02111 Eucalyptus grandis HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Eucgr.F02534 Eucalyptus grandis HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Lalb_Chr22g0350921 Lupinus albus HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Solyc03g116570.3 Solanum lycopersicum HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Sopen03g035480 Solanum pennellii HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
PGSC0003DMG400000613 Solanum tuberosum HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 67.6
Zm00001eb122820 Zea mays HOM05D006629 ORTHO05D008430 3.2e-06 54.3 37 64.9
Lsat_1_v5_gn_5_131321 Lactuca sativa HOM05D006629 ORTHO05D008430 5.4e-06 53.5 37 67.6
Lj3g0011933 Lotus japonicus HOM05D006629 ORTHO05D008430 5.4e-06 53.5 37 64.9
Nitab4.5_0001764g0020 Nicotiana tabacum HOM05D006629 ORTHO05D008430 5.4e-06 53.5 37 67.6
Os01g0173000 Oryza sativa ssp. japonica HOM05D006629 ORTHO05D008430 5.4e-06 53.5 37 64.9
Peaxi162Scf00332g00758 Petunia axillaris HOM05D006629 ORTHO05D008430 5.4e-06 53.5 37 67.6
AUR62011536 Chenopodium quinoa HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 64.9
AUR62016355 Chenopodium quinoa HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 64.9
Ca_01063_v3 Cicer arietinum L. HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 64.9
Cc04_g04220 Coffea canephora HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 70.3
Nitab4.5_0010254g0040 Nicotiana tabacum HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 67.6
Phvul.005G176800 Phaseolus vulgaris HOM05D006629 ORTHO05D008430 7.1e-06 53.1 37 64.9
Nn8g39443 Nelumbo nucifera HOM05D006629 ORTHO05D008430 9.3e-06 52.8 37 64.9
Oeu052266.1 Olea europaea HOM05D006629 ORTHO05D008430 9.3e-06 52.8 37 64.9
HPP92_021817 Vanilla planifolia HOM05D006629 ORTHO05D008430 9.3e-06 52.8 37 62.2


User provided reference genes

Program Settings