Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 5.9e-139 497.7 277 100.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 5.9e-139 497.7 277 100.0
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 4.4e-134 481.5 277 98.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.7e-133 479.6 277 97.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 9.1e-132 473.8 275 96.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.5e-131 471.5 275 95.6
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 5.6e-129 464.5 275 94.5
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.4e-127 459.9 275 93.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.2e-127 458.0 275 91.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 93.9
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.4e-124 449.9 278 92.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.0
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 3.3e-121 438.7 275 90.9
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.2e-120 434.5 275 87.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.8e-119 433.0 275 87.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.4e-118 428.7 275 87.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-118 428.7 275 87.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.4e-118 428.7 275 86.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 7.5e-118 427.6 275 85.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 275 86.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.7e-117 426.4 275 86.5
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.9e-117 424.9 275 86.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.9e-117 424.9 276 84.8
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-116 423.7 275 85.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.4e-116 423.3 275 84.7
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.4e-116 423.3 275 85.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.9e-116 422.9 275 84.7
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.9e-116 422.9 275 85.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.4e-116 422.5 275 85.5
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.4e-116 422.5 276 83.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.2e-116 422.2 275 84.0
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 3.2e-116 422.2 275 84.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 3.2e-116 422.2 275 84.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.1e-116 421.8 275 85.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 4.1e-116 421.8 275 84.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 85.1
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 85.8
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 86.2
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 85.1
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 5.4e-116 421.4 275 84.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.2e-115 420.2 273 85.0
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 84.0
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.0e-115 419.5 275 84.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.0e-115 419.5 275 83.6
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.7e-115 419.1 276 83.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.8e-115 417.5 275 83.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.7e-114 416.4 272 85.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.7e-114 416.4 274 83.9
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 84.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 84.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.7e-114 416.4 275 84.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.0e-114 415.6 275 82.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.0e-114 415.6 275 83.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.9e-114 415.2 275 84.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.9e-114 415.2 275 84.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.0e-114 414.8 275 84.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 6.6e-114 414.5 275 84.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 6.6e-114 414.5 275 82.9
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 8.6e-114 414.1 275 82.5
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.1e-113 413.7 275 82.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.5e-113 413.3 275 82.9
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.5e-113 413.3 275 82.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.5e-113 412.5 275 81.8
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 7.3e-113 411.0 275 82.2
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.2e-112 410.2 275 84.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.1e-112 409.5 275 81.5
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.8e-112 409.1 275 81.8
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.6e-112 408.7 275 81.1
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.7e-112 408.3 280 81.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 8.1e-112 407.5 275 81.8
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.1e-111 407.1 262 87.4
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.1e-111 405.6 276 81.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.4e-110 401.7 275 81.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 5.8e-110 401.4 275 80.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.7e-109 398.7 319 72.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.9e-109 398.3 275 80.0
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.9e-108 396.4 270 83.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 3.2e-108 395.6 299 74.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.1e-108 395.2 262 84.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.1e-108 395.2 262 84.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.4e-108 394.8 274 81.8
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.1e-108 394.4 282 80.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.0e-107 391.3 316 71.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 3.9e-106 388.7 276 79.0
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 3.3e-105 385.6 265 81.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 3.3e-105 385.6 275 76.0
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.3e-105 385.6 276 76.8
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.3e-105 385.2 275 78.5
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.6e-105 384.8 275 76.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.1e-103 379.0 276 77.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.0e-103 378.6 269 75.5
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.9e-103 377.5 318 69.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.6e-102 375.9 278 75.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 3.4e-102 375.6 319 64.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 9.9e-102 374.0 277 75.5
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.3e-101 373.6 297 68.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.9e-101 372.5 275 76.4
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.7e-101 372.1 276 73.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.1e-100 368.6 254 80.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.0e-98 364.0 228 87.3
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.1e-98 361.7 356 59.6
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 8.6e-98 360.9 257 80.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.5e-97 359.4 262 76.3
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.5e-97 359.4 262 75.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-95 353.2 261 77.4
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 9.3e-92 340.9 229 82.1
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-91 339.0 329 64.1
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.9e-89 333.2 223 84.8
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.6e-89 331.6 266 70.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.3e-88 330.5 275 68.7
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.3e-88 330.5 223 83.4
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.6e-88 328.9 277 63.5
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-87 326.6 249 73.9
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-87 326.6 249 73.9
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.4e-86 322.0 282 67.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.9e-84 316.6 280 66.4
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.0e-82 310.8 275 60.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.3e-81 305.8 225 79.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.4e-81 304.7 311 62.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-80 302.4 275 65.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-79 298.9 275 65.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.8e-69 265.8 256 58.6
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 3.9e-66 255.8 188 76.1
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.1e-63 245.7 274 52.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.5e-62 242.3 280 52.9
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 9.7e-57 224.6 182 73.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 8.2e-56 221.5 157 71.3
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 8.5e-53 211.5 135 81.5
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 5.5e-52 208.8 146 83.6
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.5e-49 200.7 129 79.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.8e-48 196.4 130 78.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.0e-46 190.3 300 45.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.4e-41 172.6 104 82.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 8.2e-40 168.3 90 94.4
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 5.3e-39 165.6 94 88.3
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.3e-34 150.2 81 92.6
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-31 141.4 153 55.6
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.2e-28 129.4 80 78.8
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.6e-27 126.3 71 88.7
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.6e-27 126.3 71 88.7
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.8e-26 124.0 74 82.4
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 4.1e-23 112.8 259 37.1
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.0e-21 105.9 158 45.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.6e-19 100.9 158 43.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 6.8e-18 95.5 150 38.0
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 8.8e-18 95.1 123 49.6
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-17 93.2 357 27.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-17 92.8 71 81.7
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 4.4e-17 92.8 158 40.5
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 5.7e-17 92.4 158 38.6
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-15 88.2 147 39.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.1e-15 88.2 57 73.7
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-15 87.8 71 74.6
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-14 84.0 73 67.1
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.5e-12 77.8 70 61.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.5e-12 77.0 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.3e-12 75.5 157 38.9
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.2e-11 74.7 46 71.7
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.1e-11 73.9 161 35.4
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.8e-11 73.6 269 31.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.2e-10 69.3 43 76.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.8e-09 65.1 140 41.4


User provided reference genes

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