Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p42890 Brassica napus HOM05D000139 ORTHO05D014500 2.4e-44 181.8 91 100.0
BcaC04g20174 Brassica carinata HOM05D003245 ORTHO05D014500 8.2e-21 103.6 79 68.4
A06p20490 Brassica napus HOM05D003245 ORTHO05D014500 2.0e-19 99.0 86 62.8
C09p46980 Brassica napus HOM05D000103 ORTHO05D014500 1.6e-16 89.4 52 80.8
BolC9t57546H Brassica oleracea HOM05D000103 ORTHO05D014500 1.6e-16 89.4 51 82.4
BraA06t25127Z Brassica rapa HOM05D000139 ORTHO05D014500 1.6e-16 89.4 47 87.2
C01p16410 Brassica napus HOM05D000139 ORTHO05D014500 7.9e-16 87.0 48 85.4
BcaC04g21399 Brassica carinata HOM05D000139 ORTHO05D014500 1.3e-13 79.7 78 56.4
C09p67290 Brassica napus HOM05D003378 ORTHO05D003942 9.1e-12 73.6 52 75.0
C09p32250 Brassica napus HOM05D003245 ORTHO05D017662 4.5e-11 71.2 61 63.9
BolC9t56073H Brassica oleracea HOM05D003245 ORTHO05D004125 4.5e-11 71.2 61 63.9
Sp3g12350 Schrenkiella parvula HOM05D000139 ORTHO05D000103 5.9e-11 70.9 48 72.9
AT3G14090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 7.7e-11 70.5 49 71.4
BcaC07g38722 Brassica carinata HOM05D003378 ORTHO05D003942 7.7e-11 70.5 51 74.5
C02p29520 Brassica napus HOM05D003378 ORTHO05D003942 7.7e-11 70.5 51 74.5
Carub.0003s1370 Capsella rubella HOM05D000139 ORTHO05D000103 7.7e-11 70.5 49 71.4
CARHR088950 Cardamine hirsuta HOM05D000139 ORTHO05D000103 7.7e-11 70.5 49 71.4
BcaC05g29124 Brassica carinata HOM05D000139 ORTHO05D000103 1.0e-10 70.1 50 68.0
AL3G26320 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 3.8e-10 68.2 49 69.4
CAN.G862.44 Capsicum annuum HOM05D000139 ORTHO05D000103 3.8e-10 68.2 60 60.0
MSTRG.22537 Avicennia marina HOM05D000139 ORTHO05D000103 6.5e-10 67.4 48 64.6
Aa31LG8G1320 Aethionema arabicum HOM05D000139 ORTHO05D000103 8.5e-10 67.0 53 64.2
Manes.11G016900 Manihot esculenta HOM05D000139 ORTHO05D000103 8.5e-10 67.0 49 63.3
Peaxi162Scf00207g10149 Petunia axillaris HOM05D000139 ORTHO05D000103 8.5e-10 67.0 48 66.7
Hma1.2p1_0229F.1_g096720 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 1.1e-09 66.6 48 64.6
Nitab4.5_0005153g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.1e-09 66.6 48 64.6
Nitab4.5_0006232g0060 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.1e-09 66.6 48 64.6
Prupe.3G038000 Prunus persica HOM05D000139 ORTHO05D000103 1.1e-09 66.6 49 63.3
Aa31LG10G1310 Aethionema arabicum HOM05D000139 ORTHO05D000103 1.4e-09 66.2 49 65.3
Thhalv10011317m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 1.4e-09 66.2 49 65.3
Gohir.A10G055800 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.4e-09 66.2 48 64.6
Gohir.D10G057700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.4e-09 66.2 48 64.6
Gorai.011G061800 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.4e-09 66.2 48 64.6
SalBow6G2360 Salvia bowleyana HOM05D000139 ORTHO05D000103 1.4e-09 66.2 48 64.6
SalBow6G6178 Salvia bowleyana HOM05D000139 ORTHO05D000103 1.4e-09 66.2 48 64.6
AT1G54090 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
MSTRG.10934 Avicennia marina HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 61.2
BcaC01g01432 Brassica carinata HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
A08p01240 Brassica napus HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
C02p26640 Brassica napus HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
C03p91960 Brassica napus HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
BolC3t21516H Brassica oleracea HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
BraA08t32175Z Brassica rapa HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
Carub.0001s4332 Capsella rubella HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
Cc04_g01100 Coffea canephora HOM05D000139 ORTHO05D000103 1.9e-09 65.9 39 76.9
Sp1g40530 Schrenkiella parvula HOM05D000139 ORTHO05D000103 1.9e-09 65.9 49 65.3
SGA_v2.0_scaffold71G23888 Striga asiatica HOM05D000139 ORTHO05D000103 1.9e-09 65.9 39 76.9
Cpa.g.sc25.144 Carica papaya HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
FvH4_6g35110 Fragaria vesca HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
FAN02G3961 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
FAN05G3346 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
FAN09G4556 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
FAN14G3285 Fragaria x ananassa HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
Peaxi162Scf00038g01911 Petunia axillaris HOM05D000139 ORTHO05D000103 2.5e-09 65.5 48 62.5
Potri.003G068700 Populus trichocarpa HOM05D000139 ORTHO05D000103 2.5e-09 65.5 48 62.5
RcHm_v2.0_Chr2g0146331 Rosa chinensis HOM05D000139 ORTHO05D000103 2.5e-09 65.5 49 61.2
A05p35350 Brassica napus HOM05D000139 ORTHO05D000103 3.2e-09 65.1 46 69.6
C05p53540 Brassica napus HOM05D000139 ORTHO05D000103 3.2e-09 65.1 46 69.6
BolC5t34031H Brassica oleracea HOM05D000139 ORTHO05D000103 3.2e-09 65.1 46 69.6
BraA05t22345Z Brassica rapa HOM05D000139 ORTHO05D000103 3.2e-09 65.1 46 69.6
CARHR044420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 3.2e-09 65.1 49 63.3
COL.COLO4_30788 Corchorus olitorius HOM05D000139 ORTHO05D000103 3.2e-09 65.1 48 62.5
Oeu057903.2 Olea europaea HOM05D000139 ORTHO05D000103 3.2e-09 65.1 37 78.4
Potri.001G166400 Populus trichocarpa HOM05D000139 ORTHO05D000103 3.2e-09 65.1 48 62.5
Sabra03G0040200 Salix brachista HOM05D000139 ORTHO05D000103 3.2e-09 65.1 48 62.5
Atru.chr1.4069 Acer truncatum HOM05D000139 ORTHO05D000103 4.2e-09 64.7 48 62.5
AL1G62790 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 4.2e-09 64.7 49 63.3
BcaB04g17030 Brassica carinata HOM05D000139 ORTHO05D000103 4.2e-09 64.7 49 63.3
BcaC03g15104 Brassica carinata HOM05D000139 ORTHO05D000103 4.2e-09 64.7 49 63.3
BolC2t08735H Brassica oleracea HOM05D000139 ORTHO05D000103 4.2e-09 64.7 49 63.3
Lj9P534T43 Lonicera japonica HOM05D000139 ORTHO05D000103 4.2e-09 64.7 48 62.5
Solyc03g122240.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 4.2e-09 64.7 39 74.4
Sopen03g040980 Solanum pennellii HOM05D000139 ORTHO05D000103 4.2e-09 64.7 39 74.4
PGSC0003DMG400022899 Solanum tuberosum HOM05D000139 ORTHO05D000103 4.2e-09 64.7 39 74.4
TWI23G0495 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 4.2e-09 64.7 48 62.5
TWI59G0334 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 4.2e-09 64.7 48 62.5
CANSAT56G4412 Cannabis sativa HOM05D000139 ORTHO05D000103 5.5e-09 64.3 48 60.4
CAN.G825.1 Capsicum annuum HOM05D000139 ORTHO05D000103 5.5e-09 64.3 48 64.6
Duzib192G0567 Durio zibethinus HOM05D000139 ORTHO05D000103 5.5e-09 64.3 39 74.4
Duzib235G1131 Durio zibethinus HOM05D000139 ORTHO05D000103 5.5e-09 64.3 39 74.4
Nitab4.5_0002795g0010 Nicotiana tabacum HOM05D000139 ORTHO05D000103 5.5e-09 64.3 48 64.6
SGA_v2.0_scaffold122G33321 Striga asiatica HOM05D000139 ORTHO05D000103 5.5e-09 64.3 39 74.4
Ca_23404_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Dinv37849 Davidia involucrata HOM05D000139 ORTHO05D000103 7.2e-09 63.9 48 62.5
Glyma.07G041100 Glycine max HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Lj3g0023732 Lotus japonicus HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Lalb_Chr04g0253701 Lupinus albus HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Manes.04G147700 Manihot esculenta HOM05D000139 ORTHO05D000103 7.2e-09 63.9 48 60.4
Medtr8g021330 Medicago truncatula HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Oeu006736.1 Olea europaea HOM05D000139 ORTHO05D000103 7.2e-09 63.9 37 78.4
Psat4g167560 Pisum sativum HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
PGR119G1783 Punica granatum HOM05D000139 ORTHO05D000103 7.2e-09 63.9 48 60.4
Sabra01G0126800 Salix brachista HOM05D000139 ORTHO05D000103 7.2e-09 63.9 48 60.4
TPR.G16755 Trifolium pratense HOM05D000139 ORTHO05D000103 7.2e-09 63.9 46 65.2
Haze_16061 Corylus avellana HOM05D000139 ORTHO05D000103 9.4e-09 63.5 48 60.4
Migut.I01102 Erythranthe guttata HOM05D000139 ORTHO05D000103 9.4e-09 63.5 46 63.0
Gorai.009G145500 Gossypium raimondii HOM05D000139 ORTHO05D000103 9.4e-09 63.5 63 52.4
Lsat_1_v5_gn_4_92560 Lactuca sativa HOM05D000139 ORTHO05D000103 9.4e-09 63.5 37 78.4
Solyc06g062990.3 Solanum lycopersicum HOM05D000139 ORTHO05D000103 9.4e-09 63.5 39 76.9
Sopen06g022440 Solanum pennellii HOM05D000139 ORTHO05D000103 9.4e-09 63.5 39 76.9
PGSC0003DMG400004893 Solanum tuberosum HOM05D000139 ORTHO05D000103 9.4e-09 63.5 39 76.9
THA.LOC104815618 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 9.4e-09 63.5 49 61.2
Cfa003514 Carpinus fangiana HOM05D000139 ORTHO05D000103 1.2e-08 63.2 46 63.0
DCAR_026421 Daucus carota HOM05D000139 ORTHO05D000103 1.2e-08 63.2 37 78.4
Duzib160G0694 Durio zibethinus HOM05D000139 ORTHO05D000103 1.2e-08 63.2 48 60.4
Nitab4.5_0002716g0040 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.2e-08 63.2 48 62.5
Thecc.06G123700 Theobroma cacao HOM05D000139 ORTHO05D000103 1.2e-08 63.2 46 63.0
VMungo0331G0518 Vigna mungo HOM05D000139 ORTHO05D000103 1.2e-08 63.2 49 61.2
CSS0007039 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 1.6e-08 62.8 48 60.4
DCAR_022669 Daucus carota HOM05D000139 ORTHO05D000103 1.6e-08 62.8 37 75.7
MD17G1164500 Malus domestica HOM05D000139 ORTHO05D000103 1.6e-08 62.8 49 57.1
Oeu005582.1 Olea europaea HOM05D000139 ORTHO05D000103 1.6e-08 62.8 37 75.7
QL05p003853 Quercus lobata HOM05D000139 ORTHO05D000103 1.6e-08 62.8 48 58.3
Rhsim08G0240800 Rhododendron simsii HOM05D000139 ORTHO05D000103 1.6e-08 62.8 39 74.4
GSVIVG01016723001 Vitis vinifera HOM05D000139 ORTHO05D000103 1.6e-08 62.8 39 71.8
CiPaw.01G216400 Carya illinoinensis HOM05D000139 ORTHO05D000103 2.1e-08 62.4 48 58.3
Ciclev10025154m.g Citrus clementina HOM05D000139 ORTHO05D000103 2.1e-08 62.4 48 60.4
Lsat_1_v5_gn_5_135860 Lactuca sativa HOM05D000139 ORTHO05D000103 2.7e-08 62.0 39 71.8
unitig_32.g11015 Utricularia gibba HOM05D000139 ORTHO05D000103 2.7e-08 62.0 65 53.8
Glyma.16G009800 Glycine max HOM05D000139 ORTHO05D000103 3.6e-08 61.6 46 63.0
Lsat_1_v5_gn_1_37860 Lactuca sativa HOM05D000139 ORTHO05D000103 3.6e-08 61.6 48 58.3
vmacro15049 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 3.6e-08 61.6 40 72.5
ECA232G4271 Erigeron canadensis HOM05D000139 ORTHO05D000103 4.7e-08 61.2 57 56.1
Gohir.A05G139200 Gossypium hirsutum HOM05D000139 ORTHO05D000103 4.7e-08 61.2 63 50.8
HanXRQChr04g0094381 Helianthus annuus HOM05D000139 ORTHO05D000103 4.7e-08 61.2 46 60.9
Phvul.010G127600 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 4.7e-08 61.2 46 60.9
Actinidia32201 Actinidia chinensis HOM05D000139 ORTHO05D000103 6.1e-08 60.8 59 55.9
Lalb_Chr10g0101371 Lupinus albus HOM05D000139 ORTHO05D000103 6.1e-08 60.8 46 60.9
Gohir.D05G141400 Gossypium hirsutum HOM05D000139 ORTHO05D000103 7.9e-08 60.5 63 50.8
Dinv20412 Davidia involucrata HOM05D000139 ORTHO05D000103 1.0e-07 60.1 59 54.2
PSO104G0208 Papaver somniferum HOM05D000139 ORTHO05D000103 2.3e-07 58.9 55 52.7
PSO421G0743 Papaver somniferum HOM05D000139 ORTHO05D000103 2.3e-07 58.9 55 52.7
AT1G72470 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 3.0e-07 58.5 40 67.5
Carub.0002s1932 Capsella rubella HOM05D000139 ORTHO05D000103 3.0e-07 58.5 40 67.5
TAR383G0455 Trochodendron aralioides HOM05D000139 ORTHO05D000103 3.0e-07 58.5 48 56.2
MELO3C022677.2 Cucumis melo HOM05D000139 ORTHO05D000103 3.9e-07 58.2 37 70.3
CsaV3_3G030800 Cucumis sativus L. HOM05D000139 ORTHO05D000103 3.9e-07 58.2 37 70.3
Hma1.2p1_2833F.1_g329250 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 3.9e-07 58.2 39 64.1
THA.LOC104812259 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 3.9e-07 58.2 46 58.7
PSO386G0142 Papaver somniferum HOM05D000139 ORTHO05D000103 6.7e-07 57.4 39 64.1
PSO724G1234 Papaver somniferum HOM05D000139 ORTHO05D000103 6.7e-07 57.4 39 64.1
CARHR065420 Cardamine hirsuta HOM05D000139 ORTHO05D000103 8.8e-07 57.0 40 65.0
ClCG07G014500 Citrullus lanatus HOM05D000139 ORTHO05D000103 8.8e-07 57.0 37 67.6
Migut.D00928 Erythranthe guttata HOM05D000139 ORTHO05D000103 8.8e-07 57.0 40 65.0
TAR624G0071 Trochodendron aralioides HOM05D000139 ORTHO05D000103 8.8e-07 57.0 37 67.6
Sc12g0010750 Simmondsia chinensis HOM05D000139 ORTHO05D000103 2.0e-06 55.8 57 52.6
CiPaw.02G134100 Carya illinoinensis HOM05D000139 ORTHO05D000103 2.6e-06 55.5 46 56.5
vmacro22026 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 2.6e-06 55.5 36 69.4
Aa31LG4G2800 Aethionema arabicum HOM05D000139 ORTHO05D000103 3.3e-06 55.1 37 67.6
Ah.15g095190 Amaranthus hybridus HOM05D000139 ORTHO05D000103 3.3e-06 55.1 37 67.6
TAR636G1434 Trochodendron aralioides HOM05D000139 ORTHO05D000103 3.3e-06 55.1 46 56.5
AL2G32160 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 4.4e-06 54.7 37 67.6
MBI13_g00697_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 4.4e-06 54.7 40 65.0
Sed0014349 Sechium edule HOM05D000139 ORTHO05D000103 4.4e-06 54.7 37 67.6
BcaB03g15669 Brassica carinata HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
BcaC08g45707 Brassica carinata HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
A07p30210 Brassica napus HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
C06p34960 Brassica napus HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
BolC6t38595H Brassica oleracea HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
BraA07t30658Z Brassica rapa HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
CDE05G3169 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
CDE11G0138 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.7e-06 54.3 40 62.5
EL10Ac7g16439 Beta vulgaris HOM05D000139 ORTHO05D000103 7.4e-06 53.9 37 64.9
AUR62001448 Chenopodium quinoa HOM05D000139 ORTHO05D000103 9.7e-06 53.5 37 64.9
AUR62009917 Chenopodium quinoa HOM05D000139 ORTHO05D000103 9.7e-06 53.5 37 64.9
Thhalv10019854m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 9.7e-06 53.5 37 64.9
Sp5g27550 Schrenkiella parvula HOM05D000139 ORTHO05D000103 9.7e-06 53.5 37 64.9


User provided reference genes

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