Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1912.5 1110 100.0
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1904.0 1110 99.6
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 0.0e+00 1904.0 1110 99.6
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 0.0e+00 1810.4 1122 95.3
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1806.2 1123 95.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1567.0 1126 84.3
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 0.0e+00 1386.3 1162 74.8
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 0.0e+00 1347.4 1186 70.2
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 0.0e+00 1329.3 1183 69.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 0.0e+00 1321.6 1176 68.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 0.0e+00 1291.2 1186 68.7
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 6.4e-293 1011.1 982 65.4
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.1e-287 993.8 1108 59.7
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.4e-279 966.1 1258 52.2
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 7.6e-270 934.5 1252 51.0
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 3.0e-242 842.8 1189 52.7
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.9e-159 567.8 1181 40.1
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-153 548.5 1253 40.5
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 2.9e-152 543.9 1232 38.9
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.3e-149 535.0 1217 38.4
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.3e-149 534.3 1177 39.9
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.1e-148 531.9 1274 39.3
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 2.5e-148 530.8 1173 40.1
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 3.3e-148 530.4 1175 39.8
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.4e-146 525.0 1289 38.7
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.9e-143 514.6 1263 38.1
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.1e-142 511.1 849 49.0
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.0e-141 508.8 1202 38.3
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 4.3e-140 503.4 1249 36.7
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 7.4e-140 502.7 1257 37.5
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 2.1e-139 501.1 1228 37.5
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 3.7e-139 500.4 1223 38.1
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 2.4e-138 497.7 1230 37.4
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 4.2e-135 486.9 1197 38.8
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 4.2e-135 486.9 1263 38.9
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 5.5e-135 486.5 1240 37.3
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 7.1e-135 486.1 1230 37.8
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 2.1e-134 484.6 1188 38.2
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 2.1e-134 484.6 1254 37.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.7e-134 484.2 1264 36.8
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.8e-133 481.5 1254 36.8
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-131 475.3 1255 37.4
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.7e-131 473.8 1265 36.4
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 3.7e-131 473.8 1254 35.7
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-128 465.3 1255 36.6
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.1e-127 462.2 1264 35.9
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.9e-127 461.5 1264 36.5
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.5e-127 461.1 1150 38.7
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.1e-126 458.0 1222 36.5
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 6.1e-126 456.4 1255 36.4
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 6.7e-125 453.0 1208 37.2
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.5e-124 451.8 1236 35.9
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.4e-122 445.3 1177 35.9
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 4.1e-122 443.7 1186 36.9
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 5.3e-122 443.4 1202 35.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 5.9e-121 439.9 1183 36.5
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 6.5e-120 436.4 1182 36.1
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 3.9e-117 427.2 1216 34.8
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.5e-116 425.2 1216 34.7
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 9.7e-116 422.5 1110 34.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 4.8e-115 420.2 1218 34.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 1.5e-113 415.2 1209 35.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 8.5e-112 409.5 1231 35.3
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.9e-111 408.3 1262 34.2
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 3.2e-111 407.5 1199 32.5
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 9.4e-111 406.0 1208 34.2
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 5.2e-109 400.2 1182 35.4
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 5.2e-109 400.2 1170 36.6
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 1.5e-108 398.7 1172 35.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 6.3e-107 393.3 1248 36.6
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 3.1e-106 391.0 1212 34.0
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.0e-106 389.8 1403 31.6
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.2e-105 389.0 1252 35.8
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 2.1e-102 378.3 1216 33.8
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 6.1e-102 376.7 1220 35.4
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 1.4e-101 375.6 1216 34.8
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.8e-101 375.2 1150 35.6
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 9.7e-100 369.4 1114 36.4
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.5e-95 355.5 1280 34.6
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.7e-94 351.3 1111 34.1
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.0e-93 349.4 1230 32.8
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.4e-93 349.0 1094 34.5
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.3e-93 348.2 1163 31.4
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 8.8e-93 346.3 1152 34.9
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.2e-91 341.7 1149 34.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.4e-90 338.2 1165 30.9
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 3.1e-90 337.8 1060 35.2
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 4.7e-86 323.9 1093 34.0
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.7e-86 323.9 1106 33.3
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 6.1e-86 323.6 1196 33.1
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 5.2e-85 320.5 1130 32.5
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.8e-85 319.7 1035 34.5
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 9.2e-82 309.7 1105 33.6
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.5e-79 302.4 1207 31.4
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.0e-73 282.0 1141 31.7
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.0e-72 279.6 1141 34.4
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.4e-66 259.2 1178 30.1
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.2e-65 256.1 1107 33.2
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 6.6e-64 250.4 352 46.3
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.6e-63 247.3 1008 32.1
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 4.7e-62 244.2 366 46.4
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 6.2e-62 243.8 1191 29.5
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 2.3e-61 241.9 1164 30.0
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 2.8e-54 218.4 1018 30.1
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 8.1e-54 216.9 1256 30.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.9e-53 213.4 326 46.3
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.6e-49 202.6 1002 27.7
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.9e-47 195.7 143 69.2
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.4e-45 188.7 1204 29.7
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 3.4e-44 184.9 129 68.2
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 4.4e-44 184.5 276 44.9
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.1e-42 177.2 835 28.1
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 7.1e-42 177.2 1007 29.2
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.1e-41 175.6 654 29.2
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 3.0e-40 171.8 140 69.3
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 6.6e-40 170.6 140 68.6
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 1.4e-37 162.9 542 31.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 2.6e-36 158.7 945 28.6
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.6e-33 149.4 1002 24.6
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.7e-32 143.7 361 35.7
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.1e-31 143.3 458 31.7
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 2.5e-31 142.1 156 55.1
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.6e-30 139.4 655 27.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 8.1e-30 137.1 369 33.3
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.4e-29 136.3 359 35.7
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 5.5e-26 124.4 954 28.5
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 9.3e-26 123.6 286 37.1
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 1.8e-21 109.4 156 43.6
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 4.0e-21 108.2 523 25.2
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.6e-20 104.0 189 33.9
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.7e-19 102.8 233 36.9
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 6.5e-19 100.9 104 46.2
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.2e-17 96.7 61 73.8
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.3e-16 92.4 538 25.8
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 2.5e-15 89.0 129 51.9
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.5e-15 89.0 145 38.6
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 3.3e-15 88.6 54 77.8
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 3.7e-14 85.1 72 54.2
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.8e-14 84.7 133 48.1
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 4.2e-10 71.6 127 45.7
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 3.6e-09 68.6 58 60.3
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 8.8e-08 63.9 111 34.2
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.8e-08 63.9 257 28.4
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.1e-07 63.5 62 54.8
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 6.3e-06 57.8 199 31.2


User provided reference genes

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