Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 7.0e-93 344.0 178 100.0
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 7.0e-93 344.0 178 100.0
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 7.0e-93 344.0 178 100.0
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 1.9e-77 292.7 157 96.2
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 4.1e-77 291.6 191 83.8
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 3.5e-76 288.5 190 81.6
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 1.0e-75 287.0 187 84.0
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 3.9e-75 285.0 157 94.3
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 3.3e-74 282.0 192 79.2
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 7.3e-74 280.8 192 78.6
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 7.3e-74 280.8 192 78.6
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 7.3e-74 280.8 190 81.1
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 1.4e-72 276.6 192 78.1
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 1.4e-72 276.6 192 78.1
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 5.4e-69 264.6 190 77.9
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 7.1e-69 264.2 189 78.8
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 9.2e-69 263.8 194 74.7
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 2.3e-67 259.2 195 74.9
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 3.0e-67 258.8 190 74.2
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 3.9e-51 205.3 192 62.0
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 3.2e-45 185.7 180 53.9
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 4.2e-45 185.3 182 55.5
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 5.5e-45 184.9 180 56.1
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 9.3e-45 184.1 186 55.4
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 9.3e-45 184.1 186 55.4
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 1.2e-44 183.7 180 55.0
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 2.7e-44 182.6 192 52.6
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 4.6e-44 181.8 188 55.3
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 7.9e-44 181.0 196 52.6
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.0e-43 180.6 185 55.1
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 1.3e-43 180.3 189 52.9
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 1.3e-43 180.3 181 52.5
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.3e-43 180.3 184 56.0
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 1.3e-43 180.3 184 53.8
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 2.3e-43 179.5 180 53.9
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 2.3e-43 179.5 187 54.5
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 2.3e-43 179.5 181 54.1
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 2.3e-43 179.5 190 52.6
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 3.0e-43 179.1 181 51.9
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 3.0e-43 179.1 196 51.5
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 3.9e-43 178.7 186 52.2
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 5.1e-43 178.3 180 53.9
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 5.1e-43 178.3 180 53.9
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 6.7e-43 177.9 181 51.9
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.1e-42 177.2 181 51.9
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 1.5e-42 176.8 179 55.9
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 2.5e-42 176.0 177 55.9
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 3.3e-42 175.6 185 51.4
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 3.3e-42 175.6 187 51.9
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 3.3e-42 175.6 187 55.1
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 4.3e-42 175.3 187 54.0
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 4.3e-42 175.3 192 51.0
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 4.3e-42 175.3 176 52.8
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 5.6e-42 174.9 121 68.6
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 7.4e-42 174.5 185 51.9
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 7.4e-42 174.5 185 54.1
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 7.4e-42 174.5 176 52.8
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 9.6e-42 174.1 183 53.0
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 9.6e-42 174.1 187 48.7
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 1.3e-41 173.7 185 50.8
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 1.6e-41 173.3 185 51.9
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 2.1e-41 172.9 185 51.9
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 4.8e-41 171.8 184 54.9
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 4.8e-41 171.8 180 51.1
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 6.2e-41 171.4 185 54.1
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 6.2e-41 171.4 184 51.6
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 1.8e-40 169.9 199 47.7
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 1.8e-40 169.9 178 51.1
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 1.8e-40 169.9 193 51.8
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 2.4e-40 169.5 192 49.5
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 4.0e-40 168.7 189 49.7
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 1.2e-39 167.2 185 52.4
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 1.5e-39 166.8 196 48.0
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 1.5e-39 166.8 192 49.5
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 2.0e-39 166.4 192 48.4
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 2.6e-39 166.0 194 47.9
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 2.6e-39 166.0 192 49.0
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 3.4e-39 165.6 185 49.7
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 7.6e-39 164.5 192 47.9
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 7.6e-39 164.5 191 50.3
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 2.2e-38 162.9 122 63.9
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 2.9e-38 162.5 190 48.4
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 4.9e-38 161.8 190 48.4
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.1e-37 160.6 121 61.2
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 1.9e-37 159.8 196 46.4
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.5e-37 159.5 113 67.3
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 3.2e-37 159.1 187 47.6
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 3.2e-37 159.1 187 49.7
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 4.2e-37 158.7 188 47.9
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 5.5e-37 158.3 186 48.9
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 7.1e-37 157.9 188 45.7
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 9.3e-37 157.5 170 51.8
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 1.6e-36 156.8 139 57.6
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 3.0e-35 152.5 105 69.5
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 5.1e-35 151.8 194 46.4
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 6.7e-35 151.4 113 64.6
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.9e-34 149.8 131 55.0
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 1.9e-34 149.8 181 46.4
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 2.5e-34 149.4 193 45.6
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 2.2e-33 146.4 178 45.5
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 4.8e-33 145.2 225 42.2
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 1.2e-31 140.6 134 56.0
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 3.2e-29 132.5 192 45.3
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 7.2e-29 131.3 187 43.3
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 6.7e-27 124.8 123 50.4
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 2.5e-26 122.9 121 53.7
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.3e-25 120.6 93 59.1
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 2.2e-25 119.8 187 39.6
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 8.2e-25 117.9 190 38.9
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 1.5e-23 113.6 92 60.9
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 6.5e-22 108.2 83 60.2
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 4.2e-21 105.5 94 54.3
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 3.3e-18 95.9 172 39.0
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.3e-17 94.0 109 49.5
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 8.2e-17 91.3 183 36.6
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.4e-16 90.5 66 65.2
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 5.3e-16 88.6 125 49.6
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 1.9e-13 80.1 163 33.7
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 1.6e-12 77.0 137 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 8.8e-11 71.2 168 30.4
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 1.7e-09 67.0 95 46.3
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 1.1e-08 64.3 122 31.1
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 2.4e-08 63.2 47 72.3
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.7e-06 57.0 86 40.7


User provided reference genes

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