Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 4.1e-64 248.4 182 100.0
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 1.0e-22 110.9 105 66.7
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 3.3e-21 105.9 111 64.0
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 3.3e-21 105.9 111 64.0
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 8.1e-20 101.3 100 67.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 2.6e-18 96.3 91 68.1
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 7.6e-18 94.7 102 64.7
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 2.2e-17 93.2 93 65.6
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 1.9e-16 90.1 89 66.3
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 2.1e-15 86.7 51 86.3
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.2e-10 70.9 81 54.3
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.2e-10 70.9 44 79.5
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 3.4e-10 69.3 81 54.3
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 4.5e-10 68.9 52 69.2
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 4.5e-10 68.9 50 68.0
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 4.5e-10 68.9 68 57.4
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 5.8e-10 68.6 81 53.1
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 9.9e-10 67.8 99 49.5
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 9.9e-10 67.8 106 47.2
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.9e-09 66.2 78 56.4
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 2.9e-09 66.2 108 50.0
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 4.9e-09 65.5 93 45.2
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 6.4e-09 65.1 73 53.4
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 8.4e-09 64.7 100 42.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.9e-08 63.5 48 68.8
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.9e-08 63.5 66 53.0
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 3.2e-08 62.8 45 71.1
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.2e-08 62.8 47 68.1
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 3.2e-08 62.8 67 53.7
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 4.2e-08 62.4 51 64.7
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 5.5e-08 62.0 45 68.9
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 5.5e-08 62.0 51 58.8
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 5.5e-08 62.0 93 47.3
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 7.1e-08 61.6 74 51.4
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 7.1e-08 61.6 113 49.6
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 7.1e-08 61.6 86 47.7
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 9.3e-08 61.2 67 53.7
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 1.2e-07 60.8 49 65.3
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 1.2e-07 60.8 76 51.3
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.6e-07 60.5 65 56.9
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 1.6e-07 60.5 69 52.2
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 1.6e-07 60.5 68 54.4
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 2.1e-07 60.1 81 51.9
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 2.7e-07 59.7 98 42.9
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.7e-07 59.7 117 43.6
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.7e-07 59.7 100 41.0
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.5e-07 59.3 117 38.5
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 3.5e-07 59.3 47 59.6
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 3.5e-07 59.3 51 62.7
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 4.6e-07 58.9 45 66.7
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 6.0e-07 58.5 47 68.1
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 6.0e-07 58.5 54 63.0
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.0e-07 58.5 45 68.9
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 6.0e-07 58.5 45 68.9
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 6.0e-07 58.5 124 40.3
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 6.0e-07 58.5 53 62.3
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 7.9e-07 58.2 71 49.3
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 7.9e-07 58.2 48 58.3
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 1.8e-06 57.0 62 53.2
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 1.8e-06 57.0 74 50.0
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.8e-06 57.0 46 60.9
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 2.3e-06 56.6 92 42.4
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 2.3e-06 56.6 75 50.7
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 3.0e-06 56.2 97 41.2
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 3.9e-06 55.8 82 48.8
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 5.1e-06 55.5 81 44.4
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 5.1e-06 55.5 98 44.9
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 5.1e-06 55.5 76 42.1
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 6.7e-06 55.1 53 56.6
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 6.7e-06 55.1 53 60.4
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 8.7e-06 54.7 79 44.3


User provided reference genes

Program Settings