Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 9.9e-59 229.9 119 100.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.1e-56 222.2 118 97.5
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-53 213.0 147 80.3
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-53 213.0 141 83.0
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-53 213.0 141 83.0
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-53 213.0 141 83.0
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.8e-53 211.8 141 82.3
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-52 209.9 141 82.3
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 5.8e-51 204.1 141 79.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.6e-43 178.7 97 99.0
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 4.2e-41 171.4 97 95.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 4.8e-37 157.9 79 98.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.0e-36 154.8 114 76.3
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-26 122.9 66 98.5
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 4.6e-24 114.8 57 96.5
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 7.4e-22 107.5 67 82.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 7.4e-22 107.5 131 52.7
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 7.4e-22 107.5 131 52.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-21 106.7 131 52.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 3.7e-21 105.1 131 51.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-20 102.1 131 50.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 3.1e-20 102.1 131 50.4
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.1e-20 102.1 130 50.8
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 4.1e-20 101.7 131 50.4
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 4.1e-20 101.7 131 50.4
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.2e-19 100.1 127 51.2
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.2e-19 100.1 131 49.6
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.5e-19 99.8 133 51.1
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 3.8e-18 95.1 131 47.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 3.2e-17 92.0 128 50.0
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 5.5e-17 91.3 131 46.6
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 9.4e-17 90.5 132 47.0
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 3.9e-15 85.1 86 59.3
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 3.9e-15 85.1 69 72.5
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.7e-14 81.3 86 55.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 9.7e-14 80.5 85 56.5
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-13 79.7 70 64.3
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 3.7e-13 78.6 63 68.3
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.7e-13 78.6 86 51.2
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.7e-13 78.6 86 51.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.7e-13 78.6 86 51.2
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.8e-13 78.2 86 54.7
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.3e-13 77.8 63 66.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 8.2e-13 77.4 63 66.7
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.1e-12 77.0 86 51.2
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.1e-12 77.0 86 52.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-12 77.0 86 54.7
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.1e-12 77.0 63 65.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.1e-12 77.0 68 63.2
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.8e-12 76.3 86 50.0
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.8e-12 76.3 69 65.2
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.8e-12 76.3 88 52.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.8e-12 76.3 88 52.3
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.8e-12 76.3 57 70.2
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.4e-12 75.9 63 63.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.4e-12 75.9 87 51.7
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.4e-12 75.9 63 66.7
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.4e-12 75.9 90 52.2
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.4e-12 75.9 86 53.5
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.1e-12 75.5 63 61.9
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.1e-12 75.5 63 65.1
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 3.1e-12 75.5 63 63.5
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 4.1e-12 75.1 86 53.5
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 4.1e-12 75.1 86 53.5
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.3e-12 74.7 77 55.8
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 5.3e-12 74.7 63 63.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.3e-12 74.7 86 53.5
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 5.3e-12 74.7 63 63.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.3e-12 74.7 86 52.3
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 6.9e-12 74.3 63 61.9
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 9.1e-12 73.9 63 61.9
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 9.1e-12 73.9 63 63.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 9.1e-12 73.9 63 65.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 9.1e-12 73.9 63 63.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 61.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.2e-11 73.6 86 51.2
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 61.9
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.2e-11 73.6 81 54.3
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 63.5
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 61.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 61.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.2e-11 73.6 63 61.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.5e-11 73.2 77 55.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.5e-11 73.2 63 61.9
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.5e-11 73.2 92 48.9
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.5e-11 73.2 63 63.5
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.5e-11 73.2 63 65.1
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 60.3
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 61.9
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 61.9
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 60.3
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.0e-11 72.8 86 51.2
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 63.5
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.0e-11 72.8 63 63.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.6e-11 72.4 61 62.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 3.4e-11 72.0 63 61.9
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.4e-11 72.0 63 61.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 3.4e-11 72.0 63 61.9
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 3.4e-11 72.0 63 61.9
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 4.5e-11 71.6 63 61.9
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.5e-11 71.6 63 60.3
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.5e-11 71.6 63 60.3
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.5e-11 71.6 63 61.9
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 4.5e-11 71.6 63 60.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.5e-11 71.6 57 68.4
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 5.9e-11 71.2 63 60.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 5.9e-11 71.2 63 60.3
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.9e-11 71.2 63 60.3
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 7.7e-11 70.9 63 60.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 7.7e-11 70.9 63 61.9
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.0e-10 70.5 63 58.7
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.0e-10 70.5 63 61.9
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.0e-10 70.5 63 60.3
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.0e-10 70.5 63 60.3
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.0e-10 70.5 86 48.8
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.3e-10 70.1 68 60.3
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.3e-10 70.1 63 60.3
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.3e-10 70.1 63 60.3
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-10 69.7 68 57.4
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.7e-10 69.7 63 58.7
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.7e-10 69.7 63 60.3
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.7e-10 69.7 63 60.3
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.2e-10 69.3 63 60.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 8.5e-10 67.4 80 51.2
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.4e-09 66.6 91 45.1
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.9e-09 66.2 63 57.1
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 3.2e-09 65.5 63 55.6
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.2e-09 64.3 46 71.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 6.1e-08 61.2 57 61.4
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 7.9e-08 60.8 63 54.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.9e-08 60.8 69 53.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.9e-07 58.5 63 52.4


User provided reference genes

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