Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 5.4e-53 210.7 104 100.0
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 3.0e-51 204.9 104 97.1
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.8e-47 190.7 105 92.4
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.0e-14 83.6 82 61.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 1.0e-14 83.6 82 61.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.0e-14 83.6 82 61.0
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.2e-14 82.4 83 59.0
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-14 82.0 82 59.8
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-14 82.0 82 59.8
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-14 82.0 82 59.8
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-14 82.0 81 60.5
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.9e-14 82.0 81 60.5
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.9e-14 82.0 82 59.8
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 6.5e-14 80.9 82 58.5
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 8.5e-14 80.5 82 59.8
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.4e-13 79.7 81 59.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.5e-13 79.0 82 58.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 7.2e-13 77.4 87 54.0
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 6.1e-12 74.3 76 59.2
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 1.4e-11 73.2 74 59.5
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.4e-11 73.2 74 59.5
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 3.9e-11 71.6 83 51.8
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 1.1e-10 70.1 74 54.1
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.5e-10 69.7 74 54.1
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.0e-10 69.3 74 58.1
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.5e-10 68.9 74 52.7
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.3e-10 68.6 74 55.4
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-10 68.6 74 52.7
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-10 68.6 74 52.7
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.3e-10 68.2 74 52.7
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.3e-10 68.2 82 48.8
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 4.3e-10 68.2 82 48.8
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.7e-10 67.8 74 51.4
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.7e-10 67.8 74 51.4
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 5.7e-10 67.8 74 54.1
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 7.4e-10 67.4 77 50.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.4e-10 67.4 98 41.8
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 9.7e-10 67.0 74 54.1
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 9.7e-10 67.0 74 54.1
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.7e-09 66.2 69 58.0
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-09 66.2 74 52.7
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.7e-09 66.2 74 52.7
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.7e-09 66.2 74 51.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.2e-09 65.9 76 52.6
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 2.8e-09 65.5 74 52.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 3.7e-09 65.1 74 52.7
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.7e-09 65.1 74 52.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 4.8e-09 64.7 71 53.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.8e-09 64.7 74 52.7
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 4.8e-09 64.7 74 51.4
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 4.8e-09 64.7 74 52.7
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.8e-09 64.7 74 52.7
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.8e-09 64.7 76 52.6
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 6.3e-09 64.3 74 52.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 6.3e-09 64.3 74 52.7
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.3e-09 64.3 75 53.3
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 6.3e-09 64.3 75 53.3
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 6.3e-09 64.3 74 51.4
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 8.2e-09 63.9 80 47.5
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 8.2e-09 63.9 79 50.6
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 8.2e-09 63.9 79 50.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 8.2e-09 63.9 76 48.7
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 8.2e-09 63.9 74 51.4
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 8.2e-09 63.9 81 49.4
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.1e-08 63.5 81 46.9
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.1e-08 63.5 79 49.4
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.4e-08 63.2 74 51.4
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.4e-08 63.2 74 50.0
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.4e-08 63.2 74 51.4
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.4e-08 63.2 72 52.8
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.8e-08 62.8 74 50.0
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 2.4e-08 62.4 74 50.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.4e-08 62.4 79 49.4
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 2.4e-08 62.4 79 48.1
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-08 62.4 74 50.0
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.1e-08 62.0 74 50.0
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.1e-08 61.6 81 48.1
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.1e-08 61.6 81 48.1
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.1e-08 61.6 74 50.0
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.1e-08 61.6 74 50.0
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.1e-08 61.6 74 50.0
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 50.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 50.0
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 50.0
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 5.3e-08 61.2 78 48.7
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 50.0
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 51.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 5.3e-08 61.2 74 50.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 6.9e-08 60.8 74 48.6
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 9.1e-08 60.5 82 46.3
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 9.1e-08 60.5 74 47.3
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 9.1e-08 60.5 71 50.7
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.2e-07 60.1 79 45.6
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.2e-07 60.1 74 45.9
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 1.2e-07 60.1 72 50.0
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.2e-07 60.1 74 51.4
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.2e-07 60.1 74 50.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.5e-07 59.7 74 48.6
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-07 59.7 74 48.6
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-07 59.7 74 48.6
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.5e-07 59.7 74 48.6
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.5e-07 59.7 72 50.0
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.0e-07 59.3 72 48.6
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.0e-07 59.3 74 48.6
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 2.0e-07 59.3 72 51.4
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.6e-07 58.9 74 47.3
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 2.6e-07 58.9 74 48.6
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.4e-07 58.5 74 47.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.4e-07 58.5 74 48.6
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 3.4e-07 58.5 79 46.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.5e-07 58.2 76 47.4
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 48.6
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 48.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 48.6
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 48.6
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 4.5e-07 58.2 73 45.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 50.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 4.5e-07 58.2 74 48.6
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 5.9e-07 57.8 81 44.4
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 5.9e-07 57.8 74 48.6
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 7.7e-07 57.4 77 46.8
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.7e-07 57.4 74 47.3
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 7.7e-07 57.4 79 46.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.0e-06 57.0 66 51.5
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.0e-06 57.0 73 47.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.0e-06 57.0 72 50.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.0e-06 57.0 80 47.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 1.7e-06 56.2 72 47.2
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.2e-06 55.8 72 47.2
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.8e-06 55.1 74 44.6
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 6.5e-06 54.3 77 45.5
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 8.5e-06 53.9 74 48.6


User provided reference genes

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