Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p40220 Brassica napus HOM05D002225 ORTHO05D002271 2.0e-133 479.2 249 100.0
BcaC05g28006 Brassica carinata HOM05D002225 ORTHO05D002271 1.6e-47 193.7 100 99.0
BraA06t25198Z Brassica rapa HOM05D002225 ORTHO05D002271 5.3e-30 135.6 112 67.9
A09p44280 Brassica napus HOM05D002225 ORTHO05D002271 4.5e-29 132.5 112 67.0
BraA09t39890Z Brassica rapa HOM05D002225 ORTHO05D002271 4.5e-29 132.5 112 67.0
Sp6g37600 Schrenkiella parvula HOM05D002225 ORTHO05D002271 2.5e-19 100.1 191 41.4
BcaC06g32232 Brassica carinata HOM05D002225 ORTHO05D002271 1.2e-18 97.8 57 87.7
BolC9t59910H Brassica oleracea HOM05D002225 ORTHO05D002271 1.2e-18 97.8 57 87.7
AL6G15070 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 4.7e-18 95.9 57 86.0
AT5G05230 Arabidopsis thaliana HOM05D002225 ORTHO05D002271 4.7e-18 95.9 57 86.0
C09p71470 Brassica napus HOM05D002225 ORTHO05D002271 4.7e-18 95.9 57 86.0
Carub.0006s0416 Capsella rubella HOM05D002225 ORTHO05D002271 4.7e-18 95.9 57 86.0
Thhalv10013906m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 8.0e-18 95.1 57 86.0
A10p30960 Brassica napus HOM05D002225 ORTHO05D002271 6.7e-17 92.0 58 84.5
BraA10t45141Z Brassica rapa HOM05D002225 ORTHO05D002271 6.7e-17 92.0 58 84.5
CARHR208000 Cardamine hirsuta HOM05D002225 ORTHO05D002271 6.7e-17 92.0 132 47.0
FvH4_7g25940 Fragaria vesca HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
FAN01G0750 Fragaria x ananassa HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
FAN03G1063 Fragaria x ananassa HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
FAN03G2164 Fragaria x ananassa HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
FAN06G1908 Fragaria x ananassa HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
RcHm_v2.0_Chr1g0372321 Rosa chinensis HOM05D002225 ORTHO05D002271 8.2e-15 85.1 57 77.2
Manes.10G001500 Manihot esculenta HOM05D002225 ORTHO05D002271 1.1e-14 84.7 57 77.2
Cpa.g.sc19.56 Carica papaya HOM05D002225 ORTHO05D002271 1.8e-14 84.0 57 77.2
MD01G1167800 Malus domestica HOM05D002225 ORTHO05D002271 1.8e-14 84.0 57 75.4
MSTRG.27259 Avicennia marina HOM05D002225 ORTHO05D002271 2.4e-14 83.6 57 77.2
CiPaw.01G306700 Carya illinoinensis HOM05D002225 ORTHO05D002271 2.4e-14 83.6 57 73.7
THA.LOC104816508 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 3.1e-14 83.2 65 72.3
CiPaw.02G198900 Carya illinoinensis HOM05D002225 ORTHO05D002271 4.1e-14 82.8 57 73.7
Atru.chr12.184 Acer truncatum HOM05D002225 ORTHO05D002271 5.3e-14 82.4 57 75.4
Ciclev10031722m.g Citrus clementina HOM05D002225 ORTHO05D002271 5.3e-14 82.4 57 75.4
MD07G1233800 Malus domestica HOM05D002225 ORTHO05D002271 7.0e-14 82.0 57 73.7
CANSAT56G2293 Cannabis sativa HOM05D002225 ORTHO05D002271 9.1e-14 81.6 57 73.7
Aa31LG11G6080 Aethionema arabicum HOM05D002225 ORTHO05D002271 1.2e-13 81.3 64 71.9
Oeu018735.1 Olea europaea HOM05D002225 ORTHO05D002271 1.2e-13 81.3 57 71.9
Thecc.10G179500 Theobroma cacao HOM05D002225 ORTHO05D002271 1.2e-13 81.3 57 75.4
QL08p064862 Quercus lobata HOM05D002225 ORTHO05D002271 1.6e-13 80.9 56 71.4
SalBow5G4698 Salvia bowleyana HOM05D002225 ORTHO05D002271 1.6e-13 80.9 57 71.9
Actinidia31627 Actinidia chinensis HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 71.9
Cfa001208 Carpinus fangiana HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 71.9
Haze_17358 Corylus avellana HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 71.9
Duzib106G1786 Durio zibethinus HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 73.7
Glyma.04G222600 Glycine max HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 73.7
Glyma.06G142700 Glycine max HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 73.7
Potri.019G058300 Populus trichocarpa HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 71.9
Sabra19G0073700 Salix brachista HOM05D002225 ORTHO05D002271 2.0e-13 80.5 57 71.9
COL.COLO4_19417 Corchorus olitorius HOM05D002225 ORTHO05D002271 2.6e-13 80.1 56 75.0
Eucgr.J00112 Eucalyptus grandis HOM05D002225 ORTHO05D002271 2.6e-13 80.1 57 73.7
GSVIVG01032672001 Vitis vinifera HOM05D002225 ORTHO05D002271 3.5e-13 79.7 57 73.7
CSS0010153 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 4.5e-13 79.3 57 71.9
Dinv34486 Davidia involucrata HOM05D002225 ORTHO05D002271 7.7e-13 78.6 57 70.2
HanXRQChr15g0493731 Helianthus annuus HOM05D002225 ORTHO05D002271 1.3e-12 77.8 57 70.2
Hma1.2p1_0264F.1_g106150 Hydrangea macrophylla HOM05D002225 ORTHO05D002271 1.3e-12 77.8 57 71.9
Lj1g0007571 Lotus japonicus HOM05D002225 ORTHO05D002271 1.3e-12 77.8 57 71.9
TWI53G0084 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 1.3e-12 77.8 56 69.6
VMungo1309G0791 Vigna mungo HOM05D002225 ORTHO05D002271 1.7e-12 77.4 57 73.7
Phvul.009G043900 Phaseolus vulgaris HOM05D002225 ORTHO05D002271 2.2e-12 77.0 57 73.7
Sc11g0005850 Simmondsia chinensis HOM05D002225 ORTHO05D002271 2.2e-12 77.0 57 70.2
Actinidia13647 Actinidia chinensis HOM05D002225 ORTHO05D002271 2.9e-12 76.6 52 75.0
Aqoxy4G02423 Aquilegia oxysepala HOM05D002225 ORTHO05D002271 2.9e-12 76.6 57 70.2
vmacro06892 Vaccinium macrocarpon HOM05D002225 ORTHO05D002271 2.9e-12 76.6 58 70.7
CsaV3_5G010960 Cucumis sativus L. HOM05D002225 ORTHO05D002271 3.8e-12 76.3 57 70.2
Lsat_1_v5_gn_9_60121 Lactuca sativa HOM05D002225 ORTHO05D002271 3.8e-12 76.3 57 66.7
AUR62024935 Chenopodium quinoa HOM05D002225 ORTHO05D002271 5.0e-12 75.9 104 46.2
EL10Ac2g02646 Beta vulgaris HOM05D002225 ORTHO05D002271 8.5e-12 75.1 57 66.7
ClCG07G005120 Citrullus lanatus HOM05D002225 ORTHO05D002271 1.5e-11 74.3 57 68.4
CsaV3_3G044610 Cucumis sativus L. HOM05D002225 ORTHO05D002271 1.9e-11 73.9 57 68.4
Rhsim03G0152200 Rhododendron simsii HOM05D002225 ORTHO05D002271 1.9e-11 73.9 58 69.0
Rhsim03G0152600 Rhododendron simsii HOM05D002225 ORTHO05D002271 1.9e-11 73.9 58 69.0
MELO3C018256.2 Cucumis melo HOM05D002225 ORTHO05D002271 2.5e-11 73.6 57 68.4
MELO3C020149.2 Cucumis melo HOM05D002225 ORTHO05D002271 2.5e-11 73.6 57 68.4
Lalb_Chr08g0239171 Lupinus albus HOM05D002225 ORTHO05D002271 2.5e-11 73.6 57 70.2
Nitab4.5_0002279g0020 Nicotiana tabacum HOM05D002225 ORTHO05D002271 2.5e-11 73.6 57 68.4
PGSC0003DMG402011656 Solanum tuberosum HOM05D002225 ORTHO05D002271 2.5e-11 73.6 57 68.4
AUR62030609 Chenopodium quinoa HOM05D002225 ORTHO05D002271 3.2e-11 73.2 104 45.2
DCAR_018038 Daucus carota HOM05D002225 ORTHO05D002271 3.2e-11 73.2 57 66.7
Migut.F01243 Erythranthe guttata HOM05D002225 ORTHO05D002271 3.2e-11 73.2 59 69.5
PSO339G3502 Papaver somniferum HOM05D002225 ORTHO05D002271 3.2e-11 73.2 57 66.7
PSO384G2911 Papaver somniferum HOM05D002225 ORTHO05D002271 3.2e-11 73.2 57 66.7
Medtr3g093960 Medicago truncatula HOM05D002225 ORTHO05D002271 4.2e-11 72.8 56 69.6
Nn5g26846 Nelumbo nucifera HOM05D002225 ORTHO05D002271 4.2e-11 72.8 57 66.7
TAR633G0281 Trochodendron aralioides HOM05D002225 ORTHO05D002271 4.2e-11 72.8 57 68.4
CSS0031158 Camellia sinensis var. sinensis HOM05D002225 ORTHO05D002271 5.5e-11 72.4 58 69.0
Cc02_g05360 Coffea canephora HOM05D002225 ORTHO05D002271 5.5e-11 72.4 58 67.2
Gohir.A13G006400 Gossypium hirsutum HOM05D002225 ORTHO05D002271 5.5e-11 72.4 57 68.4
Gohir.D13G006600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 5.5e-11 72.4 57 68.4
Gorai.012G014900 Gossypium raimondii HOM05D002225 ORTHO05D002271 5.5e-11 72.4 58 72.4
Gorai.013G006800 Gossypium raimondii HOM05D002225 ORTHO05D002271 5.5e-11 72.4 57 68.4
Nn2g10301 Nelumbo nucifera HOM05D002225 ORTHO05D002271 5.5e-11 72.4 57 64.9
Peaxi162Scf00167g01215 Petunia axillaris HOM05D002225 ORTHO05D002271 5.5e-11 72.4 57 66.7
Psat5g068760 Pisum sativum HOM05D002225 ORTHO05D002271 5.5e-11 72.4 56 69.6
TPR.G16112 Trifolium pratense HOM05D002225 ORTHO05D002271 5.5e-11 72.4 56 69.6
Gohir.D04G012600 Gossypium hirsutum HOM05D002225 ORTHO05D002271 7.2e-11 72.0 58 72.4
Nitab4.5_0000375g0260 Nicotiana tabacum HOM05D002225 ORTHO05D002271 7.2e-11 72.0 57 68.4
RcHm_v2.0_Chr1g0369621 Rosa chinensis HOM05D002225 ORTHO05D002271 9.4e-11 71.6 51 72.5
arahy.Tifrunner.gnm1.ann1.4SU7B4 Arachis hypogaea HOM05D002225 ORTHO05D002271 1.2e-10 71.2 55 69.1
arahy.Tifrunner.gnm1.ann1.L24DBG Arachis hypogaea HOM05D002225 ORTHO05D002271 1.2e-10 71.2 55 69.1
Solyc05g052220.3 Solanum lycopersicum HOM05D002225 ORTHO05D002271 1.2e-10 71.2 57 70.2
Sed0009031 Sechium edule HOM05D002225 ORTHO05D002271 2.1e-10 70.5 57 70.2
CDE12G0364 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.7e-10 70.1 57 66.7
MBI15_g01600_MAGBIO Magnolia biondii HOM05D002225 ORTHO05D002271 2.7e-10 70.1 58 67.2
THA.LOC104813586 Tarenaya hassleriana HOM05D002225 ORTHO05D002271 2.7e-10 70.1 57 63.2
Ca_16865_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 3.6e-10 69.7 56 67.9
Ca_29952_v3 Cicer arietinum L. HOM05D002225 ORTHO05D002271 3.6e-10 69.7 56 67.9
HanXRQChr07g0204131 Helianthus annuus HOM05D002225 ORTHO05D002271 3.6e-10 69.7 113 39.8
Sopen05g030760 Solanum pennellii HOM05D002225 ORTHO05D002271 3.6e-10 69.7 57 70.2
SGA_v2.0_scaffold160G37717 Striga asiatica HOM05D002225 ORTHO05D002271 3.6e-10 69.7 57 66.7
MSTRG.170 Avicennia marina HOM05D002225 ORTHO05D002271 4.7e-10 69.3 57 61.4
AL4G38510 Arabidopsis lyrata HOM05D002225 ORTHO05D002271 6.1e-10 68.9 57 63.2
CDE04G1638 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 1.0e-09 68.2 57 64.9
ATR1127G185 Amborella trichopoda HOM05D002225 ORTHO05D002271 1.8e-09 67.4 58 67.2
FAN10G3396 Fragaria x ananassa HOM05D002225 ORTHO05D002271 1.8e-09 67.4 93 46.2
Hund15816 Selenicereus undatus HOM05D002225 ORTHO05D002271 1.8e-09 67.4 59 62.7
Lsat_1_v5_gn_2_126241 Lactuca sativa HOM05D002225 ORTHO05D002271 2.3e-09 67.0 107 43.9
ECA232G4636 Erigeron canadensis HOM05D002225 ORTHO05D002271 5.2e-09 65.9 47 70.2
SEGI_10171 Sequoiadendron giganteum HOM05D002225 ORTHO05D002271 5.2e-09 65.9 58 65.5
vmacro17887 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 5.2e-09 65.9 49 67.3
Carub.0004s2293 Capsella rubella HOM05D002225 ORTHO05D002271 6.7e-09 65.5 57 59.6
HPP92_000772 Vanilla planifolia HOM05D002225 ORTHO05D002271 6.7e-09 65.5 57 63.2
HPP92_026797 Vanilla planifolia HOM05D002225 ORTHO05D002271 6.7e-09 65.5 57 63.2
Sp4g22970 Schrenkiella parvula HOM05D002225 ORTHO05D002271 1.2e-08 64.7 56 58.9
Aa31LG3G1480 Aethionema arabicum HOM05D002225 ORTHO05D002271 1.5e-08 64.3 57 56.1
ECA238G4625 Erigeron canadensis HOM05D002225 ORTHO05D002271 3.3e-08 63.2 48 72.9
TWI73G0482 Tripterygium wilfordii HOM05D002225 ORTHO05D002271 3.3e-08 63.2 40 80.0
unitig_736.g22956 Utricularia gibba HOM05D002225 ORTHO05D002271 3.3e-08 63.2 42 76.2
CARHR135750 Cardamine hirsuta HOM05D002225 ORTHO05D002271 5.7e-08 62.4 57 56.1
A03p22850 Brassica napus HOM05D002225 ORTHO05D002271 1.3e-07 61.2 56 55.4
Mapoly0009s0158 Marchantia polymorpha HOM05D002225 ORTHO05D002271 1.7e-07 60.8 57 59.6
Thhalv10016770m.g Eutrema salsugineum HOM05D002225 ORTHO05D002271 2.2e-07 60.5 56 55.4
BcaB01g03525 Brassica carinata HOM05D002225 ORTHO05D002271 3.7e-07 59.7 57 57.9
BcaC01g05390 Brassica carinata HOM05D002225 ORTHO05D002271 3.7e-07 59.7 56 53.6
C03p27100 Brassica napus HOM05D002225 ORTHO05D002271 4.8e-07 59.3 56 53.6
SMO142G0006 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 8.2e-07 58.5 41 70.7
SMO358G0236 Selaginella moellendorffii HOM05D002225 ORTHO05D002271 8.2e-07 58.5 41 70.7
Mapoly0105s0037 Marchantia polymorpha HOM05D002225 ORTHO05D002271 4.1e-06 56.2 51 58.8
Pp3c4_6540 Physcomitrium patens HOM05D002225 ORTHO05D002271 7.0e-06 55.5 37 75.7
Pp3c4_6562 Physcomitrium patens HOM05D002225 ORTHO05D002271 7.0e-06 55.5 37 75.7


User provided reference genes

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