Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p40040 Brassica napus HOM05D002436 ORTHO05D040631 5.6e-29 130.2 62 100.0
BolC5t32749H Brassica oleracea HOM05D002436 ORTHO05D040631 5.6e-29 130.2 62 100.0
C05p25760 Brassica napus HOM05D002436 ORTHO05D002754 8.9e-27 122.9 62 95.2
C03p83910 Brassica napus HOM05D002436 ORTHO05D100810 3.0e-22 107.8 62 87.1
BcaB05g23885 Brassica carinata HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
BcaC01g04662 Brassica carinata HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
A03p29290 Brassica napus HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
A09p28440 Brassica napus HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
C03p35190 Brassica napus HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
BolC3t15830H Brassica oleracea HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
BraA03t12125Z Brassica rapa HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
BraA09t38409Z Brassica rapa HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
Thhalv10028607m.g Eutrema salsugineum HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
THA.LOC104815202 Tarenaya hassleriana HOM05D002436 ORTHO05D002754 8.9e-11 69.7 38 86.8
BcaC04g21075 Brassica carinata HOM05D002436 ORTHO05D002754 1.2e-10 69.3 38 86.8
C09p36010 Brassica napus HOM05D002436 ORTHO05D002754 1.2e-10 69.3 38 86.8
BolC9t56435H Brassica oleracea HOM05D002436 ORTHO05D002754 1.2e-10 69.3 38 86.8
Aa31LG6G7270 Aethionema arabicum HOM05D002436 ORTHO05D002754 3.4e-10 67.8 38 81.6
BcaB01g02738 Brassica carinata HOM05D002436 ORTHO05D002754 3.4e-10 67.8 37 86.5
arahy.Tifrunner.gnm1.ann1.9SA85P Arachis hypogaea HOM05D002436 ORTHO05D002754 4.4e-10 67.4 56 57.1
arahy.Tifrunner.gnm1.ann1.EIUR6S Arachis hypogaea HOM05D002436 ORTHO05D002754 4.4e-10 67.4 56 57.1
CARHR255810 Cardamine hirsuta HOM05D002436 ORTHO05D002754 4.4e-10 67.4 38 84.2
Sp6g06710 Schrenkiella parvula HOM05D002436 ORTHO05D002754 4.4e-10 67.4 38 81.6
Aa31LG9G11290 Aethionema arabicum HOM05D002436 ORTHO05D002754 5.8e-10 67.0 35 88.6
Carub.0006s2956 Capsella rubella HOM05D002436 ORTHO05D002754 7.5e-10 66.6 38 84.2
AL6G44840 Arabidopsis lyrata HOM05D002436 ORTHO05D002754 1.3e-09 65.9 38 81.6
Dinv12194 Davidia involucrata HOM05D002436 ORTHO05D002754 1.7e-09 65.5 56 57.1
BcaB01g01515 Brassica carinata HOM05D002436 ORTHO05D002754 2.2e-09 65.1 38 81.6
AT4G10790 Arabidopsis thaliana HOM05D002436 ORTHO05D002754 3.7e-09 64.3 38 78.9
QL02p029000 Quercus lobata HOM05D002436 ORTHO05D002754 3.7e-09 64.3 59 54.2
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 8.3e-09 63.2 59 52.5
Lj2A158T86 Lonicera japonica HOM05D002436 ORTHO05D002754 8.3e-09 63.2 59 54.2
MBI04_g06930_MAGBIO Magnolia biondii HOM05D002436 ORTHO05D002754 8.3e-09 63.2 53 58.5
CSS0026665 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 1.1e-08 62.8 56 57.1
BcaB02g07175 Brassica carinata HOM05D002436 ORTHO05D002754 1.4e-08 62.4 38 76.3
BcaC02g08671 Brassica carinata HOM05D002436 ORTHO05D002754 1.4e-08 62.4 38 76.3
Lalb_Chr02g0149641 Lupinus albus HOM05D002436 ORTHO05D002754 1.9e-08 62.0 55 54.5
DCAR_006530 Daucus carota HOM05D002436 ORTHO05D002754 3.2e-08 61.2 53 56.6
Duzib068G0364 Durio zibethinus HOM05D002436 ORTHO05D002754 3.2e-08 61.2 56 55.4
Gohir.A02G097400 Gossypium hirsutum HOM05D002436 ORTHO05D002754 4.1e-08 60.8 56 55.4
Gohir.D03G086400 Gossypium hirsutum HOM05D002436 ORTHO05D002754 4.1e-08 60.8 56 55.4
Gorai.003G075800 Gossypium raimondii HOM05D002436 ORTHO05D002754 4.1e-08 60.8 56 55.4
SalBow6G0415 Salvia bowleyana HOM05D002436 ORTHO05D002754 4.1e-08 60.8 53 56.6
CSS0046293 Camellia sinensis var. sinensis HOM05D002436 ORTHO05D002754 5.4e-08 60.5 59 50.8
Cpa.g.sc175.7 Carica papaya HOM05D002436 ORTHO05D002754 5.4e-08 60.5 53 58.5
GSVIVG01019629001 Vitis vinifera HOM05D002436 ORTHO05D002754 5.4e-08 60.5 59 52.5
Ciclev10020047m.g Citrus clementina HOM05D002436 ORTHO05D002754 7.1e-08 60.1 56 55.4
Gorai.008G257200 Gossypium raimondii HOM05D002436 ORTHO05D002754 7.1e-08 60.1 56 53.6
Sc01g0010540 Simmondsia chinensis HOM05D002436 ORTHO05D002754 7.1e-08 60.1 59 52.5
CDE12G0294 Ceratophyllum demersum HOM05D002436 ORTHO05D002754 9.2e-08 59.7 53 54.7
COL.COLO4_10773 Corchorus olitorius HOM05D002436 ORTHO05D002754 9.2e-08 59.7 56 53.6
Gohir.A12G239000 Gossypium hirsutum HOM05D002436 ORTHO05D002754 9.2e-08 59.7 56 53.6
Gohir.D12G240200 Gossypium hirsutum HOM05D002436 ORTHO05D002754 9.2e-08 59.7 56 53.6
HanXRQChr07g0189261 Helianthus annuus HOM05D002436 ORTHO05D002754 9.2e-08 59.7 35 80.0
Oeu041380.1 Olea europaea HOM05D000295 ORTHO05D002754 9.2e-08 59.7 59 52.5
Atru.chr9.1902 Acer truncatum HOM05D002436 ORTHO05D002754 1.2e-07 59.3 56 53.6
Duzib205G1410 Durio zibethinus HOM05D002436 ORTHO05D002754 1.2e-07 59.3 56 51.8
HanXRQChr02g0047191 Helianthus annuus HOM05D002436 ORTHO05D002754 1.2e-07 59.3 35 77.1
Lalb_Chr21g0311661 Lupinus albus HOM05D002436 ORTHO05D002754 1.2e-07 59.3 51 54.9
Os10g0520600 Oryza sativa ssp. japonica HOM05D002436 ORTHO05D002754 1.2e-07 59.3 53 54.7
VMungo0720G0667 Vigna mungo HOM05D002436 ORTHO05D002754 1.2e-07 59.3 35 74.3
Duzib084G1267 Durio zibethinus HOM05D002436 ORTHO05D002754 1.6e-07 58.9 56 53.6
EL10Ac5g12460 Beta vulgaris HOM05D002436 ORTHO05D002754 2.1e-07 58.5 51 56.9
Cfa011942 Carpinus fangiana HOM05D002436 ORTHO05D002754 2.1e-07 58.5 56 53.6
AUR62019899 Chenopodium quinoa HOM05D002436 ORTHO05D002754 2.1e-07 58.5 51 56.9
Haze_09145 Corylus avellana HOM05D002436 ORTHO05D002754 2.1e-07 58.5 56 53.6
Sabra03G0105600 Salix brachista HOM05D002436 ORTHO05D002754 2.1e-07 58.5 55 54.5
Manes.01G052108 Manihot esculenta HOM05D002436 ORTHO05D002754 2.7e-07 58.2 35 77.1
Nitab4.5_0000673g0100 Nicotiana tabacum HOM05D002436 ORTHO05D002754 2.7e-07 58.2 56 53.6
Nitab4.5_0001962g0050 Nicotiana tabacum HOM05D002436 ORTHO05D002754 2.7e-07 58.2 56 53.6
Thecc.03G223600 Theobroma cacao HOM05D002436 ORTHO05D002754 2.7e-07 58.2 56 51.8
TAR629G0988 Trochodendron aralioides HOM05D002436 ORTHO05D002754 2.7e-07 58.2 52 53.8
CANSAT21G2172 Cannabis sativa HOM05D002436 ORTHO05D002754 3.5e-07 57.8 53 54.7
CiPaw.11G114200 Carya illinoinensis HOM05D002436 ORTHO05D002754 3.5e-07 57.8 56 53.6
ClCG01G001610 Citrullus lanatus HOM05D002436 ORTHO05D002754 3.5e-07 57.8 59 50.8
TWI60G1305 Tripterygium wilfordii HOM05D002436 ORTHO05D002754 3.5e-07 57.8 55 54.5
Ah.12g053050 Amaranthus hybridus HOM05D002436 ORTHO05D002754 4.6e-07 57.4 35 77.1
CiPaw.12G078800 Carya illinoinensis HOM05D002436 ORTHO05D002754 4.6e-07 57.4 56 53.6
AUR62007035 Chenopodium quinoa HOM05D002436 ORTHO05D002754 4.6e-07 57.4 35 77.1
ECA233G1501 Erigeron canadensis HOM05D002436 ORTHO05D002754 4.6e-07 57.4 33 78.8
Glyma.20G216900 Glycine max HOM05D002436 ORTHO05D002754 4.6e-07 57.4 56 51.8
Hund11359 Selenicereus undatus HOM05D002436 ORTHO05D002754 4.6e-07 57.4 56 51.8
ATR0772G173 Amborella trichopoda HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 55.8
Aqoxy7G00039 Aquilegia oxysepala HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 53.8
CsaV3_5G001770 Cucumis sativus L. HOM05D002436 ORTHO05D002754 6.0e-07 57.0 56 51.8
Eucgr.D01693 Eucalyptus grandis HOM05D002436 ORTHO05D002754 6.0e-07 57.0 53 54.7
FvH4_5g11270 Fragaria vesca HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
FAN04G0034 Fragaria x ananassa HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
FAN08G1669 Fragaria x ananassa HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
FAN13G1750 Fragaria x ananassa HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
FAN18G2378 Fragaria x ananassa HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
FAN18G3358 Fragaria x ananassa HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
Phvul.L005701 Phaseolus vulgaris HOM05D002436 ORTHO05D002754 6.0e-07 57.0 31 80.6
Sed0009775 Sechium edule HOM05D002436 ORTHO05D002754 6.0e-07 57.0 55 52.7
SEGI_26682 Sequoiadendron giganteum HOM05D002436 ORTHO05D002754 6.0e-07 57.0 52 57.7
Lsat_1_v5_gn_6_9060 Lactuca sativa HOM05D002436 ORTHO05D002754 7.8e-07 56.6 33 78.8
Prupe.5G127400 Prunus persica HOM05D002436 ORTHO05D002754 7.8e-07 56.6 55 52.7
TAR374G1290 Trochodendron aralioides HOM05D002436 ORTHO05D002754 7.8e-07 56.6 52 53.8
vmacro11516 Vaccinium macrocarpon HOM05D002436 ORTHO05D002754 7.8e-07 56.6 35 74.3
Migut.F01458 Erythranthe guttata HOM05D002436 ORTHO05D002754 1.0e-06 56.2 53 50.9
HanXRQChr13g0415531 Helianthus annuus HOM05D002436 ORTHO05D002754 1.0e-06 56.2 33 75.8
Potri.001G085600 Populus trichocarpa HOM05D002436 ORTHO05D002754 1.0e-06 56.2 36 75.0
TWI81G0820 Tripterygium wilfordii HOM05D002436 ORTHO05D002754 1.0e-06 56.2 55 52.7
Lsat_1_v5_gn_6_82361 Lactuca sativa HOM05D002436 ORTHO05D002754 1.3e-06 55.8 32 81.2
MD06G1114700 Malus domestica HOM05D002436 ORTHO05D002754 1.3e-06 55.8 38 68.4
MD14G1136100 Malus domestica HOM05D002436 ORTHO05D002754 1.3e-06 55.8 38 68.4
Manes.02G004500 Manihot esculenta HOM05D002436 ORTHO05D002754 1.3e-06 55.8 35 71.4
Nitab4.5_0002728g0040 Nicotiana tabacum HOM05D002436 ORTHO05D002754 1.3e-06 55.8 56 50.0
Pp3c15_17250 Physcomitrium patens HOM05D002436 ORTHO05D002754 1.3e-06 55.8 35 74.3
MSTRG.2012 Avicennia marina HOM05D002436 ORTHO05D002754 1.7e-06 55.5 36 72.2
Nn1g00344 Nelumbo nucifera HOM05D002436 ORTHO05D002754 1.7e-06 55.5 52 51.9
Nitab4.5_0005042g0020 Nicotiana tabacum HOM05D002436 ORTHO05D002754 1.7e-06 55.5 56 50.0
Pp3c9_5600 Physcomitrium patens HOM05D002436 ORTHO05D002754 1.7e-06 55.5 35 71.4
Cc08_g16590 Coffea canephora HOM05D002436 ORTHO05D002754 2.3e-06 55.1 56 51.8
RcHm_v2.0_Chr7g0186581 Rosa chinensis HOM05D002436 ORTHO05D002754 2.3e-06 55.1 52 55.8
Sabra01G0062000 Salix brachista HOM05D002436 ORTHO05D002754 2.3e-06 55.1 35 74.3
SMO367G0520 Selaginella moellendorffii HOM05D002436 ORTHO05D002754 2.3e-06 55.1 33 78.8
Ca_09935_v3 Cicer arietinum L. HOM05D002436 ORTHO05D002754 3.9e-06 54.3 52 50.0
Ca_09945_v3 Cicer arietinum L. HOM05D002436 ORTHO05D002754 3.9e-06 54.3 52 50.0
Peaxi162Scf00102g01851 Petunia axillaris HOM05D002436 ORTHO05D002754 3.9e-06 54.3 56 50.0
Sed0007254 Sechium edule HOM05D002436 ORTHO05D002754 3.9e-06 54.3 52 53.8
Solyc08g008510.3 Solanum lycopersicum HOM05D002436 ORTHO05D002754 3.9e-06 54.3 46 60.9
Sopen08g004360 Solanum pennellii HOM05D002436 ORTHO05D002754 3.9e-06 54.3 46 60.9
PGSC0003DMG400005799 Solanum tuberosum HOM05D002436 ORTHO05D002754 3.9e-06 54.3 46 60.9
SGA_v2.0_scaffold2G01023 Striga asiatica HOM05D002436 ORTHO05D002754 3.9e-06 54.3 55 50.9
Actinidia27295 Actinidia chinensis HOM05D002436 ORTHO05D002754 5.1e-06 53.9 36 72.2
PSO063G1665 Papaver somniferum HOM05D002436 ORTHO05D002754 5.1e-06 53.9 35 71.4
CAN.G567.74 Capsicum annuum HOM05D002436 ORTHO05D002754 6.6e-06 53.5 53 50.9
Mapoly0001s0291 Marchantia polymorpha HOM05D002436 ORTHO05D002754 6.6e-06 53.5 40 65.0
PSO782G5195 Papaver somniferum HOM05D002436 ORTHO05D002754 6.6e-06 53.5 35 71.4
PGR031G1341 Punica granatum HOM05D002436 ORTHO05D002754 6.6e-06 53.5 53 50.9


User provided reference genes

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