Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p39220 Brassica napus HOM05D020469 ORTHO05D022045 5.3e-81 304.3 153 100.0
BolC5t32655H Brassica oleracea HOM05D020469 ORTHO05D022045 4.5e-80 301.2 153 99.3
C02p24540 Brassica napus HOM05D020469 ORTHO05D022045 8.5e-79 297.0 153 98.0
BolC2t07195H Brassica oleracea HOM05D020469 ORTHO05D022045 8.5e-79 297.0 153 97.4
C03p64770 Brassica napus HOM05D020469 ORTHO05D022045 1.3e-74 283.1 155 93.5
BolC3t18740H Brassica oleracea HOM05D020469 ORTHO05D022045 1.4e-73 279.6 155 92.9
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 5.0e-31 138.3 87 87.4
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 5.0e-31 138.3 87 87.4
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 4.7e-29 131.7 90 84.4
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 4.7e-29 131.7 88 85.2
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 4.7e-29 131.7 88 85.2
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 4.7e-29 131.7 88 85.2
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 1.5e-27 126.7 89 79.8
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 1.5e-27 126.7 88 80.7
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 2.0e-27 126.3 89 78.7
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 2.6e-27 125.9 89 79.8
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 5.8e-27 124.8 88 79.5
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 1.3e-23 113.6 92 70.7
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 3.4e-19 99.0 92 67.4
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 1.3e-18 97.1 88 63.6
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 1.3e-18 97.1 88 63.6
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 1.3e-18 97.1 88 63.6
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 2.4e-17 92.8 88 67.0
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 1.4e-09 67.0 96 46.9
Lsat_1_v5_gn_2_36420 Lactuca sativa HOM05D000222 ORTHO05D004962 4.1e-09 65.5 95 46.3
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 4.1e-09 65.5 108 43.5
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 9.2e-09 64.3 109 42.2
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 9.2e-09 64.3 109 42.2
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 1.2e-08 63.9 108 43.5
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 1.6e-08 63.5 112 41.1
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 4.6e-08 62.0 109 43.1
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 4.6e-08 62.0 104 46.2
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 4.6e-08 62.0 105 44.8
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 7.8e-08 61.2 104 43.3
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 2.3e-07 59.7 114 40.4
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 2.3e-07 59.7 122 37.7
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 3.0e-07 59.3 121 38.0
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 3.0e-07 59.3 115 40.0
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 3.0e-07 59.3 109 40.4
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 3.0e-07 59.3 112 41.1
unitig_52.g17291 Utricularia gibba HOM05D000222 ORTHO05D004962 3.0e-07 59.3 111 44.1
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 3.9e-07 58.9 116 39.7
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 5.1e-07 58.5 112 40.2
Glyma.07G174100 Glycine max HOM05D000222 ORTHO05D004962 5.1e-07 58.5 103 42.7
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 5.1e-07 58.5 103 43.7
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 5.1e-07 58.5 108 43.5
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 5.1e-07 58.5 115 40.0
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 5.1e-07 58.5 120 38.3
MELO3C005247.2 Cucumis melo HOM05D000222 ORTHO05D004962 6.6e-07 58.2 99 43.4
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 6.6e-07 58.2 112 38.4
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 6.6e-07 58.2 116 41.4
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 8.6e-07 57.8 112 42.0
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 8.6e-07 57.8 99 44.4
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 1.1e-06 57.4 112 41.1
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 1.1e-06 57.4 101 42.6
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 1.1e-06 57.4 83 42.2
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 1.5e-06 57.0 118 40.7
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 1.5e-06 57.0 105 41.9
Lalb_Chr12g0209391 Lupinus albus HOM05D000222 ORTHO05D004962 1.5e-06 57.0 112 42.0
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 1.5e-06 57.0 114 40.4
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 1.5e-06 57.0 114 40.4
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 1.9e-06 56.6 122 37.7
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 1.9e-06 56.6 113 40.7
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 1.9e-06 56.6 108 40.7
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 1.9e-06 56.6 116 40.5
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 1.9e-06 56.6 99 43.4
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 2.5e-06 56.2 116 41.4
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 3.3e-06 55.8 100 45.0
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 3.3e-06 55.8 112 42.0
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 3.3e-06 55.8 111 40.5
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.3e-06 55.8 111 40.5
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.3e-06 55.8 111 40.5
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 3.3e-06 55.8 111 40.5
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 4.3e-06 55.5 114 42.1
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 4.3e-06 55.5 113 39.8
ECA246G4790 Erigeron canadensis HOM05D000222 ORTHO05D004962 4.3e-06 55.5 103 46.6
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 4.3e-06 55.5 118 39.8
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 5.6e-06 55.1 114 42.1
Hma1.2p1_1450F.1_g284240 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 5.6e-06 55.1 117 39.3
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 5.6e-06 55.1 120 38.3
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 7.3e-06 54.7 111 38.7
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 7.3e-06 54.7 108 40.7
Peaxi162Scf00937g00112 Petunia axillaris HOM05D000222 ORTHO05D004962 9.6e-06 54.3 110 42.7


User provided reference genes

Program Settings