Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 6.3e-28 127.1 83 100.0
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 6.3e-28 127.1 83 100.0
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 6.3e-28 127.1 83 100.0
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 5.0e-25 117.5 83 96.4
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 5.0e-25 117.5 83 96.4
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.8e-22 109.0 83 78.3
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-22 109.0 83 85.5
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 4.0e-22 107.8 82 90.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 5.2e-22 107.5 83 77.1
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.5e-21 105.9 83 77.1
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 3.3e-21 104.8 83 83.1
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.4e-21 104.4 83 83.1
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.7e-20 102.4 83 73.5
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 4.8e-20 100.9 83 88.0
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 1.4e-19 99.4 83 80.7
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 1.4e-19 99.4 83 80.7
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-19 99.0 85 81.2
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-19 99.0 85 81.2
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 1.8e-19 99.0 85 81.2
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 1.8e-19 99.0 85 81.2
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 2.4e-19 98.6 86 80.2
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 2.4e-19 98.6 86 80.2
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 2.0e-18 95.5 83 77.1
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 9.4e-16 86.7 84 67.9
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 1.2e-13 79.7 86 68.6
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.5e-13 79.3 75 62.7
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 4.4e-13 77.8 84 70.2
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-12 75.9 84 57.1
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 2.8e-12 75.1 84 57.1
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 2.8e-12 75.1 84 57.1
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 2.8e-12 75.1 84 57.1
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 2.8e-12 75.1 84 57.1
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 2.8e-12 75.1 84 57.1
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.7e-12 74.7 85 68.2
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 4.1e-11 71.2 70 57.1
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.0e-09 66.6 85 55.3
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.0e-09 66.6 85 63.5
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-09 65.9 85 55.3
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 1.7e-09 65.9 85 55.3
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 1.7e-09 65.9 85 55.3
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.9e-08 62.4 42 73.8
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.5e-08 62.0 61 59.0
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 3.2e-08 61.6 86 60.5
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 3.2e-08 61.6 86 60.5
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 4.2e-08 61.2 65 56.9
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.2e-08 61.2 41 73.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 7.2e-08 60.5 65 55.4
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 7.2e-08 60.5 42 69.0
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.4e-08 60.1 64 48.4
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.6e-07 59.3 58 50.0
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 42 71.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 3.6e-07 58.2 58 50.0
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.7e-07 57.8 67 61.2
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 4.7e-07 57.8 67 61.2
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.7e-07 57.8 67 47.8
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 4.7e-07 57.8 42 69.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.7e-07 57.8 58 53.4
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 6.1e-07 57.4 65 56.9
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 65 50.8
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 65 50.8
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.1e-07 57.4 78 47.4
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 6.1e-07 57.4 58 53.4
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.1e-07 57.4 41 68.3
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 8.0e-07 57.0 42 66.7
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.0e-07 57.0 51 56.9
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 8.0e-07 57.0 67 47.8
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 1.0e-06 56.6 42 69.0
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 1.0e-06 56.6 42 69.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.0e-06 56.6 58 55.2
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-06 56.6 83 42.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.4e-06 56.2 67 46.3
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 1.4e-06 56.2 55 56.4
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.8e-06 55.8 67 47.8
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 1.8e-06 55.8 39 69.2
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.8e-06 55.8 58 53.4
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.8e-06 55.8 56 64.3
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.8e-06 55.8 56 64.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.3e-06 55.5 42 64.3
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 2.3e-06 55.5 41 63.4
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.3e-06 55.5 76 43.4
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 2.3e-06 55.5 33 75.8
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 2.3e-06 55.5 60 55.0
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.3e-06 55.5 41 65.9
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 56 60.7
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.0e-06 55.1 42 61.9
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.0e-06 55.1 42 69.0
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.0e-06 55.1 40 65.0
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.0e-06 55.1 42 69.0
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.0e-06 55.1 42 69.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.0e-06 55.1 34 70.6
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.0e-06 55.1 56 57.1
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 3.0e-06 55.1 42 64.3
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 3.0e-06 55.1 49 61.2
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 3.0e-06 55.1 65 56.9
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 4.0e-06 54.7 40 65.0
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.0e-06 54.7 42 61.9
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.0e-06 54.7 41 63.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.0e-06 54.7 42 61.9
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 4.0e-06 54.7 56 51.8
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.0e-06 54.7 62 62.9
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 4.0e-06 54.7 32 78.1
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.2e-06 54.3 54 59.3
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 56 57.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 56 57.1
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 56 66.1
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.2e-06 54.3 42 61.9
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 6.8e-06 53.9 62 50.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 6.8e-06 53.9 64 53.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 6.8e-06 53.9 36 69.4
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 6.8e-06 53.9 57 52.6
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 6.8e-06 53.9 36 69.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.8e-06 53.9 59 52.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.8e-06 53.9 41 63.4


User provided reference genes

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