Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.4e-20 101.3 53 100.0
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.4e-20 101.3 53 100.0
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 3.9e-15 84.0 46 93.5
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 3.9e-15 84.0 46 93.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 3.9e-15 84.0 46 93.5
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 3.9e-15 84.0 46 93.5
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 6.7e-15 83.2 46 91.3
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 6.7e-15 83.2 46 91.3
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 6.7e-15 83.2 46 91.3
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 6.7e-15 83.2 46 91.3
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 8.7e-15 82.8 46 91.3
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 8.7e-15 82.8 45 93.3
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 8.7e-15 82.8 46 91.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.1e-14 82.4 45 93.3
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.3e-14 80.9 46 91.3
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.3e-14 80.9 46 91.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.3e-14 80.9 46 91.3
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.3e-14 80.9 46 91.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.6e-14 80.1 45 93.3
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.3e-13 79.0 46 87.0
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.8e-13 77.8 48 83.3
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 3.7e-13 77.4 45 91.1
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 8.1e-13 76.3 48 83.3
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.1e-12 74.3 46 82.6
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 4.0e-12 73.9 46 80.4
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 5.3e-12 73.6 46 82.6
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.9e-12 73.2 45 82.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.9e-12 73.2 45 82.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.2e-11 72.4 46 78.3
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.2e-11 72.4 48 72.9
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.2e-11 72.4 46 80.4
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.5e-11 72.0 48 75.0
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.5e-11 72.0 45 84.4
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.0e-11 71.6 41 90.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.0e-11 71.6 45 80.0
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.6e-11 71.2 41 85.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 2.6e-11 71.2 45 82.2
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.6e-11 71.2 45 82.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 4.5e-11 70.5 45 80.0
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 5.8e-11 70.1 42 85.7
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 5.8e-11 70.1 45 80.0
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 9.9e-11 69.3 45 80.0
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.3e-10 68.9 45 75.6
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.3e-10 68.9 45 75.6
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-10 68.6 41 85.4
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.7e-10 68.6 41 85.4
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.7e-10 68.6 45 80.0
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.7e-10 68.6 46 73.9
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.7e-10 68.6 45 75.6
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.7e-10 68.6 45 77.8
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.2e-10 68.2 46 76.1
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.2e-10 68.2 46 73.9
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.2e-10 68.2 45 75.6
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.9e-10 67.8 41 80.5
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.9e-10 67.8 45 73.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 2.9e-10 67.8 45 75.6
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.8e-10 67.4 46 73.9
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.9e-10 67.0 41 82.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.9e-10 67.0 41 82.9
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 6.4e-10 66.6 39 82.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 8.4e-10 66.2 48 70.8
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 8.4e-10 66.2 41 82.9
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 8.4e-10 66.2 42 78.6
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 8.4e-10 66.2 40 82.5
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.1e-09 65.9 41 82.9
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.1e-09 65.9 41 80.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.1e-09 65.9 40 80.0
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.1e-09 65.9 45 73.3
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.1e-09 65.9 45 75.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.1e-09 65.9 41 78.0
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.4e-09 65.5 44 77.3
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.4e-09 65.5 46 69.6
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.4e-09 65.5 45 73.3
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.9e-09 65.1 46 71.7
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.9e-09 65.1 46 71.7
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 2.4e-09 64.7 41 78.0
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-09 64.7 45 75.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.4e-09 64.7 41 82.9
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 2.4e-09 64.7 45 75.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.4e-09 64.7 40 80.0
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.4e-09 64.7 41 80.5
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.2e-09 64.3 41 80.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.2e-09 64.3 41 80.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.2e-09 64.3 44 72.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 4.2e-09 63.9 45 73.3
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 4.2e-09 63.9 41 78.0
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 4.2e-09 63.9 41 82.9
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.2e-09 63.9 41 82.9
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.2e-09 63.9 40 77.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 4.2e-09 63.9 41 75.6
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 4.2e-09 63.9 41 75.6
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 4.2e-09 63.9 41 75.6
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 4.2e-09 63.9 45 71.1
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 4.2e-09 63.9 39 79.5
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.5e-09 63.5 45 73.3
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 5.5e-09 63.5 41 80.5
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 5.5e-09 63.5 45 73.3
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 7.1e-09 63.2 45 73.3
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 7.1e-09 63.2 41 78.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 7.1e-09 63.2 40 80.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 7.1e-09 63.2 41 80.5
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 7.1e-09 63.2 41 78.0
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 7.1e-09 63.2 41 78.0
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 9.3e-09 62.8 41 75.6
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 9.3e-09 62.8 39 79.5
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 9.3e-09 62.8 40 77.5
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 9.3e-09 62.8 40 77.5
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 9.3e-09 62.8 40 77.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.2e-08 62.4 41 75.6
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.6e-08 62.0 41 73.2
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.6e-08 62.0 45 71.1
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.6e-08 62.0 41 78.0
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.1e-08 61.6 41 75.6
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 2.7e-08 61.2 41 75.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.5e-08 60.8 41 73.2
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 3.5e-08 60.8 41 75.6
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 4.6e-08 60.5 41 80.5
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 6.0e-08 60.1 41 75.6
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 6.0e-08 60.1 45 68.9
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 7.9e-08 59.7 40 70.0
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 7.9e-08 59.7 40 70.0
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.9e-08 59.7 45 71.1
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 7.9e-08 59.7 45 68.9
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 7.9e-08 59.7 45 66.7
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 73.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 73.2
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.8e-07 58.5 41 68.3
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 2.3e-07 58.2 38 78.9
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-07 58.2 41 73.2
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-07 58.2 41 73.2
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.3e-07 58.2 41 73.2
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 2.3e-07 58.2 42 66.7
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.9e-07 57.4 41 73.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.9e-07 57.4 45 62.2
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 5.1e-07 57.0 41 75.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 6.7e-07 56.6 41 75.6
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 6.7e-07 56.6 39 69.2
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 6.7e-07 56.6 45 64.4
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.7e-07 56.2 41 70.7
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.7e-07 56.2 41 70.7
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.7e-07 56.2 41 70.7
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 8.7e-07 56.2 47 68.1
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 8.7e-07 56.2 41 75.6
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 73.2
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.1e-06 55.8 41 73.2
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.5e-06 55.5 40 75.0
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.5e-06 54.7 40 70.0
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.5e-06 54.7 41 70.7
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.6e-06 53.5 47 66.0


User provided reference genes

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