Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p39120 Brassica napus HOM05D002187 ORTHO05D002243 1.8e-66 255.8 127 100.0
BcaC05g27904 Brassica carinata HOM05D002187 ORTHO05D002243 8.7e-37 157.1 124 70.2
BcaB03g13751 Brassica carinata HOM05D002187 ORTHO05D002243 4.0e-26 121.7 141 49.6
Sp1g27900 Schrenkiella parvula HOM05D002187 ORTHO05D002243 5.3e-26 121.3 141 50.4
Thhalv10008373m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 6.9e-26 120.9 141 49.6
AL1G46350 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
BcaC05g27253 Brassica carinata HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
A09p33980 Brassica napus HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
C05p31620 Brassica napus HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
BolC5t31885H Brassica oleracea HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
BraA09t38944Z Brassica rapa HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
Carub.0001s3055 Capsella rubella HOM05D002187 ORTHO05D002243 2.6e-25 119.0 141 49.6
BcaB07g32896 Brassica carinata HOM05D002187 ORTHO05D002243 3.4e-25 118.6 141 48.9
CARHR031590 Cardamine hirsuta HOM05D002187 ORTHO05D002243 4.5e-25 118.2 141 49.6
AT1G32220 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 5.8e-25 117.9 141 48.9
Aa31LG2G13780 Aethionema arabicum HOM05D002187 ORTHO05D002243 7.1e-23 110.9 141 46.1
TPR.G19442 Trifolium pratense HOM05D002187 ORTHO05D002243 7.9e-22 107.5 141 42.6
COL.COLO4_16942 Corchorus olitorius HOM05D002187 ORTHO05D002243 3.9e-21 105.1 141 41.1
Dinv25259 Davidia involucrata HOM05D002187 ORTHO05D002243 3.9e-21 105.1 147 41.5
Psat0s3175g0040 Pisum sativum HOM05D002187 ORTHO05D002243 3.9e-21 105.1 141 41.1
RcHm_v2.0_Chr7g0211771 Rosa chinensis HOM05D002187 ORTHO05D002243 8.7e-21 104.0 141 41.8
QL12p001640 Quercus lobata HOM05D002187 ORTHO05D002243 1.1e-20 103.6 141 41.1
Solyc08g076450.3 Solanum lycopersicum HOM05D002187 ORTHO05D002243 1.1e-20 103.6 140 41.4
GSVIVG01013094001 Vitis vinifera HOM05D002187 ORTHO05D002243 1.1e-20 103.6 141 41.8
Sopen08g025030 Solanum pennellii HOM05D002187 ORTHO05D002243 1.5e-20 103.2 141 41.1
Aqoxy7G03665 Aquilegia oxysepala HOM05D002187 ORTHO05D002243 1.9e-20 102.8 140 42.1
Glyma.09G207700 Glycine max HOM05D002187 ORTHO05D002243 2.5e-20 102.4 141 39.7
VMungo1215G1464 Vigna mungo HOM05D002187 ORTHO05D002243 2.5e-20 102.4 141 39.7
Atru.chr6.1523 Acer truncatum HOM05D002187 ORTHO05D002243 4.3e-20 101.7 141 40.4
Medtr5g029260 Medicago truncatula HOM05D002187 ORTHO05D002243 4.3e-20 101.7 141 39.7
Migut.A01173 Erythranthe guttata HOM05D002187 ORTHO05D002243 5.7e-20 101.3 140 40.0
ATR0829G202 Amborella trichopoda HOM05D002187 ORTHO05D002243 7.4e-20 100.9 140 40.7
Cfa012507 Carpinus fangiana HOM05D002187 ORTHO05D002243 7.4e-20 100.9 141 39.0
Hma1.2p1_1569F.1_g291210 Hydrangea macrophylla HOM05D002187 ORTHO05D002243 7.4e-20 100.9 140 40.0
Cpa.g.sc208.7 Carica papaya HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 41.1
CiPaw.12G068200 Carya illinoinensis HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 39.7
FvH4_5g23050 Fragaria vesca HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 39.7
Gohir.A08G153700 Gossypium hirsutum HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 41.1
Gohir.D08G174600 Gossypium hirsutum HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 41.1
Gorai.004G182300 Gossypium raimondii HOM05D002187 ORTHO05D002243 9.7e-20 100.5 141 41.1
TAR629G3310 Trochodendron aralioides HOM05D002187 ORTHO05D002243 9.7e-20 100.5 140 39.3
Haze_08162 Corylus avellana HOM05D002187 ORTHO05D002243 1.3e-19 100.1 141 38.3
MD04G1103200 Malus domestica HOM05D002187 ORTHO05D002243 1.3e-19 100.1 140 39.3
PSO063G3694 Papaver somniferum HOM05D002187 ORTHO05D002243 1.3e-19 100.1 140 41.4
PSO782G5054 Papaver somniferum HOM05D002187 ORTHO05D002243 1.3e-19 100.1 140 41.4
THA.LOC104814415 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 1.3e-19 100.1 141 41.1
DCAR_008223 Daucus carota HOM05D002187 ORTHO05D002243 2.2e-19 99.4 147 40.8
Potri.001G136900 Populus trichocarpa HOM05D002187 ORTHO05D002243 2.2e-19 99.4 141 39.0
MSTRG.12179 Avicennia marina HOM05D002187 ORTHO05D002243 2.8e-19 99.0 141 39.0
Lalb_Chr16g0381081 Lupinus albus HOM05D002187 ORTHO05D002243 2.8e-19 99.0 141 39.0
Manes.17G017016 Manihot esculenta HOM05D002187 ORTHO05D002243 2.8e-19 99.0 141 39.0
PGSC0003DMG401014805 Solanum tuberosum HOM05D002187 ORTHO05D002243 2.8e-19 99.0 141 39.0
Actinidia01318 Actinidia chinensis HOM05D002187 ORTHO05D002243 3.7e-19 98.6 140 39.3
Ca_25179_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 3.7e-19 98.6 140 39.3
Sed0014736 Sechium edule HOM05D002187 ORTHO05D002243 3.7e-19 98.6 141 39.0
Duzib205G1577 Durio zibethinus HOM05D002187 ORTHO05D002243 4.8e-19 98.2 141 39.7
Phvul.002G136800 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 6.3e-19 97.8 141 39.0
Os04g0403500 Oryza sativa ssp. japonica HOM05D002187 ORTHO05D002243 8.2e-19 97.4 141 38.3
MELO3C003439.2 Cucumis melo HOM05D002187 ORTHO05D002243 1.1e-18 97.1 140 40.7
CsaV3_3G048850 Cucumis sativus L. HOM05D002187 ORTHO05D002243 1.1e-18 97.1 140 40.7
HanXRQChr03g0083261 Helianthus annuus HOM05D002187 ORTHO05D002243 1.4e-18 96.7 141 39.7
Lj2g0006141 Lotus japonicus HOM05D002187 ORTHO05D002243 1.4e-18 96.7 141 39.0
MBI04_g32201_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 1.4e-18 96.7 140 38.6
MBI04_g44374_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 1.4e-18 96.7 140 38.6
Sc01g0007160 Simmondsia chinensis HOM05D002187 ORTHO05D002243 1.4e-18 96.7 140 37.1
Zm00001eb084520 Zea mays HOM05D002187 ORTHO05D002243 1.4e-18 96.7 141 39.0
CSS0021500 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.8e-18 96.3 140 38.6
CSS0029237 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.8e-18 96.3 140 38.6
Eucgr.D02227 Eucalyptus grandis HOM05D002187 ORTHO05D002243 1.8e-18 96.3 141 37.6
Thecc.03G310100 Theobroma cacao HOM05D002187 ORTHO05D002243 1.8e-18 96.3 141 39.0
Ciclev10001973m.g Citrus clementina HOM05D002187 ORTHO05D002243 2.4e-18 95.9 141 39.7
Nn3g19388 Nelumbo nucifera HOM05D002187 ORTHO05D002243 2.4e-18 95.9 141 37.6
TWI81G0454 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 3.1e-18 95.5 140 37.9
ECA240G4717 Erigeron canadensis HOM05D002187 ORTHO05D002243 6.9e-18 94.4 141 38.3
Lsat_1_v5_gn_6_80041 Lactuca sativa HOM05D002187 ORTHO05D002243 1.5e-17 93.2 141 36.9
PGR031G3168 Punica granatum HOM05D002187 ORTHO05D002243 2.0e-17 92.8 141 37.6
Ah.12g055500 Amaranthus hybridus HOM05D002187 ORTHO05D002243 3.4e-17 92.0 141 38.3
CDE02G2745 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 4.5e-17 91.7 133 39.1
Hund14373 Selenicereus undatus HOM05D002187 ORTHO05D002243 1.3e-16 90.1 141 35.5
HPP92_009014 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.3e-16 90.1 141 36.9
arahy.Tifrunner.gnm1.ann1.4F622V Arachis hypogaea HOM05D002187 ORTHO05D002243 2.2e-16 89.4 153 35.3
arahy.Tifrunner.gnm1.ann1.XIJ7JJ Arachis hypogaea HOM05D002187 ORTHO05D002243 2.2e-16 89.4 153 35.3
SMO115G0242 Selaginella moellendorffii HOM05D002187 ORTHO05D002243 8.5e-16 87.4 141 34.0
unitig_748.g7541 Utricularia gibba HOM05D002187 ORTHO05D002243 1.4e-15 86.7 150 36.0
FAN18G1153 Fragaria x ananassa HOM05D002187 ORTHO05D002243 1.9e-15 86.3 150 37.3
FAN18G3772 Fragaria x ananassa HOM05D002187 ORTHO05D002243 1.9e-15 86.3 150 37.3
FAN04G1656 Fragaria x ananassa HOM05D002187 ORTHO05D002243 2.5e-15 85.9 150 37.3
FAN08G0350 Fragaria x ananassa HOM05D002187 ORTHO05D002243 3.2e-15 85.5 150 36.7
Mapoly0022s0160 Marchantia polymorpha HOM05D002187 ORTHO05D002243 3.6e-14 82.0 141 32.6
PGSC0003DMG402014805 Solanum tuberosum HOM05D002187 ORTHO05D002243 1.9e-12 76.3 125 37.6
Nitab4.5_0000529g0160 Nicotiana tabacum HOM05D002187 ORTHO05D002243 2.5e-12 75.9 140 35.7
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 7.4e-12 74.3 128 36.7
Pp3c24_18550 Physcomitrium patens HOM05D002187 ORTHO05D002243 9.7e-12 73.9 140 31.4
Cc08_g03450 Coffea canephora HOM05D002187 ORTHO05D002243 2.2e-11 72.8 124 37.1
Peaxi162Scf00170g00717 Petunia axillaris HOM05D002187 ORTHO05D002243 2.8e-11 72.4 124 37.9
AUR62007352 Chenopodium quinoa HOM05D002187 ORTHO05D002243 3.7e-11 72.0 135 35.6
Lj2A231G39 Lonicera japonica HOM05D002187 ORTHO05D002243 3.7e-11 72.0 125 36.0
Glyma.01G014400 Glycine max HOM05D002187 ORTHO05D002243 4.8e-11 71.6 42 64.3
SGA_v2.0_scaffold198G41073 Striga asiatica HOM05D002187 ORTHO05D002243 4.8e-11 71.6 125 36.8
AUR62018642 Chenopodium quinoa HOM05D002187 ORTHO05D002243 6.3e-11 71.2 124 34.7
Nitab4.5_0000809g0060 Nicotiana tabacum HOM05D002187 ORTHO05D002243 6.3e-11 71.2 122 36.9
Rhsim11G0021500 Rhododendron simsii HOM05D002187 ORTHO05D002243 8.2e-11 70.9 132 35.6
CAN.G726.23 Capsicum annuum HOM05D002187 ORTHO05D002243 1.4e-10 70.1 124 35.5
vmacro00279 Vaccinium macrocarpon HOM05D002187 ORTHO05D002243 1.4e-10 70.1 122 36.9
SalBow7G3594 Salvia bowleyana HOM05D002187 ORTHO05D002243 3.1e-10 68.9 124 34.7
EL10Ac5g12014 Beta vulgaris HOM05D002187 ORTHO05D002243 4.1e-10 68.6 124 35.5
CBR_g3776 Chara braunii HOM05D002187 ORTHO05D002243 6.9e-10 67.8 141 31.2
Sabra01G0106000 Salix brachista HOM05D002187 ORTHO05D002243 6.9e-10 67.8 141 32.6
Lalb_Chr05g0215761 Lupinus albus HOM05D002187 ORTHO05D002243 1.2e-09 67.0 42 61.9
Nn1g00209 Nelumbo nucifera HOM05D002187 ORTHO05D002243 2.2e-08 62.8 34 76.5
Pp3c23_16120 Physcomitrium patens HOM05D002187 ORTHO05D002243 2.9e-08 62.4 141 28.4
Peaxi162Scf00256g00711 Petunia axillaris HOM05D002187 ORTHO05D002243 8.5e-08 60.8 34 76.5
AUR62037697 Chenopodium quinoa HOM05D002187 ORTHO05D002243 1.2e-06 57.0 100 32.0
Oeu017081.2 Olea europaea HOM05D002187 ORTHO05D002243 1.6e-06 56.6 40 62.5
AagrBONN_evm.TU.Sc2ySwM_362.887 Anthoceros agrestis HOM05D002187 ORTHO05D002243 3.6e-06 55.5 41 51.2
ClCG09G011640 Citrullus lanatus HOM05D002187 ORTHO05D002243 6.1e-06 54.7 32 75.0


User provided reference genes

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