Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 6.1e-32 140.2 70 100.0
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 3.7e-21 104.4 70 74.3
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 8.2e-21 103.2 70 72.9
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 2.4e-20 101.7 70 74.3
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.7e-18 95.5 70 68.6
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.7e-18 95.5 70 68.6
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 5.0e-18 94.0 70 67.1
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 5.0e-18 94.0 70 67.1
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 6.5e-18 93.6 71 70.4
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 8.5e-18 93.2 70 67.1
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 4.2e-17 90.9 70 67.1
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 7.2e-17 90.1 70 65.7
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 7.2e-17 90.1 70 65.7
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 2.1e-16 88.6 70 65.7
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.0e-16 86.7 70 64.3
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.4e-15 85.9 70 62.9
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 6.7e-15 83.6 70 65.7
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 6.7e-15 83.6 69 60.9
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 2.0e-14 82.0 70 62.9
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 4.4e-14 80.9 70 58.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.4e-14 80.9 68 61.8
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 4.4e-14 80.9 66 65.2
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 4.4e-14 80.9 68 61.8
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 5.7e-14 80.5 70 60.0
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 1.7e-13 79.0 70 58.6
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 1.7e-13 79.0 70 60.0
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 2.2e-13 78.6 68 57.4
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.2e-13 78.6 69 56.5
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 3.7e-13 77.8 68 55.9
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 1.1e-12 76.3 70 57.1
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.1e-12 76.3 70 57.1
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 2.4e-12 75.1 68 55.9
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 5.3e-12 73.9 69 58.0
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 9.1e-12 73.2 68 52.9
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.6e-11 72.4 68 54.4
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 2.0e-11 72.0 56 69.6
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 3.5e-11 71.2 54 70.4
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 5.9e-11 70.5 54 66.7
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 5.9e-11 70.5 52 67.3
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 1.0e-10 69.7 53 66.0
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 1.0e-10 69.7 53 66.0
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 2.9e-10 68.2 58 60.3
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 3.8e-10 67.8 53 64.2
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 5.0e-10 67.4 63 52.4
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 6.5e-10 67.0 54 64.8
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 8.5e-10 66.6 53 67.9
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 8.5e-10 66.6 54 64.8
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 8.5e-10 66.6 53 64.2
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 8.5e-10 66.6 53 66.0
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 1.1e-09 66.2 53 66.0
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 1.5e-09 65.9 50 64.0
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 1.9e-09 65.5 59 55.9
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 1.9e-09 65.5 59 55.9
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.9e-09 65.5 53 62.3
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.5e-09 65.1 54 61.1
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 2.5e-09 65.1 53 66.0
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 2.5e-09 65.1 46 73.9
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 3.2e-09 64.7 51 66.7
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-09 64.7 55 63.6
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-09 64.7 51 66.7
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 3.2e-09 64.7 55 63.6
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 3.2e-09 64.7 51 66.7
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.5e-09 63.9 53 60.4
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.2e-08 62.8 53 58.5
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.2e-08 62.8 54 57.4
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.7e-08 60.8 54 59.3
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.1e-08 60.5 47 63.8
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 8.0e-08 60.1 53 62.3
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.0e-08 60.1 51 58.8
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 1.0e-07 59.7 58 48.3
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 1.4e-07 59.3 53 58.5
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.4e-07 59.3 52 61.5
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 1.8e-07 58.9 39 79.5
THA.LOC104814143 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.8e-07 58.9 51 56.9
BcaC07g41727 Brassica carinata HOM05D000162 ORTHO05D000090 3.0e-07 58.2 38 76.3
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 3.0e-07 58.2 41 75.6
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 3.0e-07 58.2 41 75.6
Thhalv10002441m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.0e-07 58.2 42 73.8
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 5.2e-07 57.4 70 45.7
AL3G36780 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.7e-07 57.0 51 60.8
Carub.0001s1231 Capsella rubella HOM05D000162 ORTHO05D000090 2.6e-06 55.1 51 54.9
BraA09t37012Z Brassica rapa HOM05D000162 ORTHO05D003288 4.4e-06 54.3 46 56.5
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 7.5e-06 53.5 54 48.1
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.5e-06 53.5 68 38.2
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 7.5e-06 53.5 68 38.2
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.7e-06 53.1 46 60.9
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 9.7e-06 53.1 33 81.8


User provided reference genes

Program Settings