Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p38780 Brassica napus HOM05D001781 ORTHO05D001711 1.4e-42 175.6 76 100.0
A05p24960 Brassica napus HOM05D001781 ORTHO05D001711 4.3e-23 110.9 47 100.0
BraA05t21379Z Brassica rapa HOM05D001781 ORTHO05D001711 4.3e-23 110.9 47 100.0
AT1G32360 Arabidopsis thaliana HOM05D001781 ORTHO05D001711 1.6e-22 109.0 60 78.3
Carub.0001s3073 Capsella rubella HOM05D001781 ORTHO05D001711 2.8e-22 108.2 47 95.7
AL1G46550 Arabidopsis lyrata HOM05D001781 ORTHO05D001711 3.1e-21 104.8 58 77.6
CARHR031730 Cardamine hirsuta HOM05D001781 ORTHO05D001711 4.0e-21 104.4 45 95.6
BcaB03g13740 Brassica carinata HOM05D001781 ORTHO05D001711 6.8e-21 103.6 47 89.4
Thhalv10007908m.g Eutrema salsugineum HOM05D001781 ORTHO05D001711 8.9e-21 103.2 44 97.7
Sp1g28530 Schrenkiella parvula HOM05D001781 ORTHO05D001711 8.9e-21 103.2 44 97.7
Aa31LG2G13650 Aethionema arabicum HOM05D001781 ORTHO05D001711 7.5e-20 100.1 47 89.4
BcaC05g27272 Brassica carinata HOM05D001781 ORTHO05D001711 2.2e-19 98.6 44 90.9
A09p33810 Brassica napus HOM05D001781 ORTHO05D001711 2.2e-19 98.6 44 90.9
C05p31800 Brassica napus HOM05D001781 ORTHO05D001711 2.2e-19 98.6 44 90.9
BolC5t31909H Brassica oleracea HOM05D001781 ORTHO05D001711 2.2e-19 98.6 44 90.9
BraA09t38931Z Brassica rapa HOM05D001781 ORTHO05D001711 2.2e-19 98.6 44 90.9
THA.LOC104812754 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 1.7e-16 89.0 44 90.9
BcaB07g32919 Brassica carinata HOM05D001781 ORTHO05D001711 3.0e-16 88.2 42 85.7
Aa31LG9G15440 Aethionema arabicum HOM05D001781 ORTHO05D001711 5.6e-15 84.0 44 77.3
Sp4g17650 Schrenkiella parvula HOM05D001781 ORTHO05D001711 1.4e-13 79.3 44 77.3
AT2G35430 Arabidopsis thaliana HOM05D001781 ORTHO05D001711 5.2e-13 77.4 44 75.0
Thhalv10016994m.g Eutrema salsugineum HOM05D001781 ORTHO05D001711 3.4e-12 74.7 42 76.2
BolC4t22922H Brassica oleracea HOM05D001781 ORTHO05D001711 1.6e-09 65.9 56 62.5
BolC4t22943H Brassica oleracea HOM05D001781 ORTHO05D001711 1.6e-09 65.9 56 62.5
Carub.0004s1711 Capsella rubella HOM05D001781 ORTHO05D001711 1.6e-09 65.9 43 67.4
BcaC02g11648 Brassica carinata HOM05D001781 ORTHO05D001711 2.1e-09 65.5 56 62.5
C04p12750 Brassica napus HOM05D001781 ORTHO05D001711 2.1e-09 65.5 56 62.5
Sabra01G0109600 Salix brachista HOM05D001781 ORTHO05D001711 2.7e-09 65.1 63 49.2
CARHR129570 Cardamine hirsuta HOM05D001781 ORTHO05D001711 6.0e-09 63.9 42 69.0
TWI81G0595 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 1.3e-08 62.8 66 50.0
Atru.chr6.1653 Acer truncatum HOM05D001781 ORTHO05D001711 2.3e-08 62.0 46 58.7
CiPaw.11G095400 Carya illinoinensis HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
MELO3C003423.2 Cucumis melo HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
CsaV3_3G049030 Cucumis sativus L. HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
Lalb_Chr16g0381271 Lupinus albus HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
Phvul.003G284200 Phaseolus vulgaris HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
Potri.001G140800 Populus trichocarpa HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
TWI15G0233 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
VMungo0251G2200 Vigna mungo HOM05D001781 ORTHO05D001711 3.0e-08 61.6 29 86.2
Eucgr.E00271 Eucalyptus grandis HOM05D001781 ORTHO05D001711 3.9e-08 61.2 29 82.8
QL12p004835 Quercus lobata HOM05D001781 ORTHO05D001711 3.9e-08 61.2 28 85.7
BraA05t19969Z Brassica rapa HOM05D001781 ORTHO05D001711 5.1e-08 60.8 61 57.4
PGR042G1951 Punica granatum HOM05D001781 ORTHO05D001711 5.1e-08 60.8 72 40.3
arahy.Tifrunner.gnm1.ann1.BDLH6M Arachis hypogaea HOM05D001781 ORTHO05D001711 6.6e-08 60.5 32 78.1
arahy.Tifrunner.gnm1.ann1.U0SE7F Arachis hypogaea HOM05D001781 ORTHO05D001711 6.6e-08 60.5 32 78.1
Duzib068G0201 Durio zibethinus HOM05D001781 ORTHO05D001711 6.6e-08 60.5 32 81.2
Sabra03G0062800 Salix brachista HOM05D001781 ORTHO05D001711 6.6e-08 60.5 29 82.8
Manes.17G014200 Manihot esculenta HOM05D001781 ORTHO05D001711 8.7e-08 60.1 29 79.3
Cpa.g.sc90.64 Carica papaya HOM05D001781 ORTHO05D001711 1.1e-07 59.7 44 68.2
Ca_02433_v3 Cicer arietinum L. HOM05D001781 ORTHO05D001711 1.1e-07 59.7 29 82.8
Glyma.01G095100 Glycine max HOM05D001781 ORTHO05D001711 1.1e-07 59.7 29 82.8
Lalb_Chr05g0215931 Lupinus albus HOM05D001781 ORTHO05D001711 1.1e-07 59.7 29 82.8
RcHm_v2.0_Chr7g0210151 Rosa chinensis HOM05D001781 ORTHO05D001711 1.1e-07 59.7 29 82.8
Thecc.03G225100 Theobroma cacao HOM05D001781 ORTHO05D001711 1.1e-07 59.7 29 82.8
Gohir.A11G031300 Gossypium hirsutum HOM05D001781 ORTHO05D001711 1.5e-07 59.3 32 78.1
Gohir.D11G030000 Gossypium hirsutum HOM05D001781 ORTHO05D001711 1.5e-07 59.3 32 78.1
Gorai.007G032800 Gossypium raimondii HOM05D001781 ORTHO05D001711 1.5e-07 59.3 32 78.1
ClCG09G011800 Citrullus lanatus HOM05D001781 ORTHO05D001711 1.9e-07 58.9 29 82.8
BcaB02g09431 Brassica carinata HOM05D001781 ORTHO05D001711 2.5e-07 58.5 44 63.6
CiPaw.12G065100 Carya illinoinensis HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 82.8
Ciclev10015789m.g Citrus clementina HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 79.3
FAN04G2783 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 79.3
FAN08G0159 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 79.3
FAN18G3931 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 79.3
FAN18G4246 Fragaria x ananassa HOM05D001781 ORTHO05D001711 2.5e-07 58.5 29 79.3
Cfa012462 Carpinus fangiana HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 86.2
Duzib084G0329 Durio zibethinus HOM05D001781 ORTHO05D001711 3.3e-07 58.2 32 78.1
Duzib205G1979 Durio zibethinus HOM05D001781 ORTHO05D001711 3.3e-07 58.2 32 78.1
Glyma.08G270701 Glycine max HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 79.3
Lj4g0027970 Lotus japonicus HOM05D001781 ORTHO05D001711 3.3e-07 58.2 32 78.1
Lalb_Chr09g0325591 Lupinus albus HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 79.3
Medtr8g066730 Medicago truncatula HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 79.3
Prupe.5G033000 Prunus persica HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 79.3
TPR.G3329 Trifolium pratense HOM05D001781 ORTHO05D001711 3.3e-07 58.2 29 79.3
A05p10310 Brassica napus HOM05D001781 ORTHO05D001711 4.3e-07 57.8 45 66.7
Sed0021791 Sechium edule HOM05D001781 ORTHO05D001711 4.3e-07 57.8 32 75.0
COL.COLO4_17000 Corchorus olitorius HOM05D001781 ORTHO05D001711 5.6e-07 57.4 29 82.8
HanXRQChr17g0536161 Helianthus annuus HOM05D001781 ORTHO05D001711 5.6e-07 57.4 56 48.2
Potri.003G093600 Populus trichocarpa HOM05D001781 ORTHO05D001711 5.6e-07 57.4 29 79.3
Actinidia14796 Actinidia chinensis HOM05D001781 ORTHO05D001711 7.3e-07 57.0 34 70.6
Dinv25228 Davidia involucrata HOM05D001781 ORTHO05D001711 7.3e-07 57.0 34 70.6
Dinv28971 Davidia involucrata HOM05D001781 ORTHO05D001711 7.3e-07 57.0 34 70.6
Rhsim07G0128600 Rhododendron simsii HOM05D001781 ORTHO05D001711 7.3e-07 57.0 34 70.6
vmacro14180 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 7.3e-07 57.0 34 70.6
Actinidia03365 Actinidia chinensis HOM05D001781 ORTHO05D001711 9.6e-07 56.6 34 67.6
MD06G1036400 Malus domestica HOM05D001781 ORTHO05D001711 9.6e-07 56.6 29 79.3
Lj2C236T4 Lonicera japonica HOM05D001781 ORTHO05D001711 1.2e-06 56.2 29 75.9
Sed0025142 Sechium edule HOM05D001781 ORTHO05D001711 1.2e-06 56.2 29 75.9
FAN13G2503 Fragaria x ananassa HOM05D001781 ORTHO05D001711 1.6e-06 55.8 29 75.9
Nitab4.5_0002998g0030 Nicotiana tabacum HOM05D001781 ORTHO05D001711 1.6e-06 55.8 29 79.3
Psat4g121560 Pisum sativum HOM05D001781 ORTHO05D001711 1.6e-06 55.8 52 51.9
CSS0048099 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 2.1e-06 55.5 34 67.6
Nitab4.5_0000645g0100 Nicotiana tabacum HOM05D001781 ORTHO05D001711 2.1e-06 55.5 29 79.3
Peaxi162Scf00516g00651 Petunia axillaris HOM05D001781 ORTHO05D001711 2.1e-06 55.5 29 79.3
Solyc06g072720.3 Solanum lycopersicum HOM05D001781 ORTHO05D001711 2.1e-06 55.5 29 79.3
Sopen06g029090 Solanum pennellii HOM05D001781 ORTHO05D001711 2.1e-06 55.5 29 79.3
Actinidia25974 Actinidia chinensis HOM05D001781 ORTHO05D001711 2.8e-06 55.1 34 67.6
Peaxi162Scf00815g00352 Petunia axillaris HOM05D001781 ORTHO05D001711 4.7e-06 54.3 29 75.9
Aqoxy3G02311 Aquilegia oxysepala HOM05D001781 ORTHO05D001711 6.2e-06 53.9 28 75.0
PGSC0003DMG400026937 Solanum tuberosum HOM05D001781 ORTHO05D001711 6.2e-06 53.9 29 75.9
Cc08_g02980 Coffea canephora HOM05D001781 ORTHO05D001711 8.1e-06 53.5 34 64.7
PGSC0003DMG400026471 Solanum tuberosum HOM05D001781 ORTHO05D001711 8.1e-06 53.5 29 79.3


User provided reference genes

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