Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27831 Brassica carinata HOM05D005771 ORTHO05D007173 9.5e-157 557.0 319 100.0
C05p38290 Brassica napus HOM05D005771 ORTHO05D007173 9.5e-157 557.0 319 100.0
BolC5t32561H Brassica oleracea HOM05D005771 ORTHO05D007173 9.5e-157 557.0 319 100.0
A05p24640 Brassica napus HOM05D005771 ORTHO05D007173 8.0e-140 500.7 320 91.2
BraA05t21350Z Brassica rapa HOM05D005771 ORTHO05D007173 8.0e-140 500.7 320 91.2
AL1G47010 Arabidopsis lyrata HOM05D005771 ORTHO05D007173 5.8e-114 414.8 319 73.4
AT1G32730 Arabidopsis thaliana HOM05D005771 ORTHO05D007173 4.9e-113 411.8 319 72.1
Thhalv10008194m.g Eutrema salsugineum HOM05D005771 ORTHO05D007173 1.1e-112 410.6 318 73.9
C05p32200 Brassica napus HOM05D005771 ORTHO05D007173 3.5e-111 405.6 324 71.6
BolC5t31952H Brassica oleracea HOM05D005771 ORTHO05D007173 3.5e-111 405.6 324 71.6
Sp1g28240 Schrenkiella parvula HOM05D005771 ORTHO05D007173 1.7e-110 403.3 325 76.0
CARHR032110 Cardamine hirsuta HOM05D005771 ORTHO05D007173 2.6e-106 389.4 317 69.1
Carub.0001s3106 Capsella rubella HOM05D005771 ORTHO05D007173 6.4e-105 384.8 319 68.7
BcaC05g27301 Brassica carinata HOM05D005771 ORTHO05D007173 8.7e-102 374.4 336 66.1
Aa31LG2G13250 Aethionema arabicum HOM05D005771 ORTHO05D007173 3.7e-92 342.4 328 62.2
THA.LOC104812740 Tarenaya hassleriana HOM05D005771 ORTHO05D007173 2.1e-87 326.6 317 63.1
THA.LOC104807943 Tarenaya hassleriana HOM05D005771 ORTHO05D007173 5.9e-74 282.0 331 55.9
Hma1.2p1_0414F.1_g147560 Hydrangea macrophylla HOM05D005771 ORTHO05D007173 4.1e-59 232.6 296 48.0
CiPaw.11G085900 Carya illinoinensis HOM05D005771 ORTHO05D007173 3.5e-58 229.6 303 48.8
MD06G1043400 Malus domestica HOM05D005771 ORTHO05D007173 3.5e-58 229.6 329 44.7
PGR031G0896 Punica granatum HOM05D005771 ORTHO05D007173 2.9e-57 226.5 296 48.3
Potri.003G085901 Populus trichocarpa HOM05D005771 ORTHO05D007173 8.5e-57 224.9 298 47.7
Dinv25170 Davidia involucrata HOM05D005771 ORTHO05D007173 1.5e-56 224.2 318 46.5
Cfa012362 Carpinus fangiana HOM05D005771 ORTHO05D007173 2.7e-55 219.9 305 46.2
Atru.chr9.1139 Acer truncatum HOM05D005771 ORTHO05D007173 4.7e-55 219.2 339 45.7
Prupe.5G050200 Prunus persica HOM05D005771 ORTHO05D007173 1.0e-54 218.0 295 46.4
Potri.001G148500 Populus trichocarpa HOM05D005771 ORTHO05D007173 1.4e-54 217.6 334 43.4
Ciclev10020716m.g Citrus clementina HOM05D005771 ORTHO05D007173 8.8e-54 214.9 309 46.6
CANSAT21G2176 Cannabis sativa HOM05D005771 ORTHO05D007173 3.4e-53 213.0 320 43.1
Gorai.009G296800 Gossypium raimondii HOM05D005771 ORTHO05D007173 1.7e-52 210.7 286 46.5
TAR629G1255 Trochodendron aralioides HOM05D005771 ORTHO05D007173 3.7e-52 209.5 308 43.8
QL12p007731 Quercus lobata HOM05D005771 ORTHO05D007173 6.3e-52 208.8 315 43.2
RcHm_v2.0_Chr7g0207891 Rosa chinensis HOM05D005771 ORTHO05D007173 8.3e-52 208.4 324 43.5
Gohir.D05G283033 Gossypium hirsutum HOM05D005771 ORTHO05D007173 1.1e-51 208.0 286 46.5
MD16G1267400 Malus domestica HOM05D005771 ORTHO05D007173 1.1e-51 208.0 334 41.6
FvH4_5g20870 Fragaria vesca HOM05D005771 ORTHO05D007173 1.4e-51 207.6 324 43.2
TWI81G0410 Tripterygium wilfordii HOM05D005771 ORTHO05D007173 1.4e-51 207.6 305 43.3
Ca_22032_v3 Cicer arietinum L. HOM05D005771 ORTHO05D007173 5.4e-51 205.7 283 45.6
Nn6g33714 Nelumbo nucifera HOM05D005771 ORTHO05D007173 5.4e-51 205.7 330 41.2
Thecc.10G165100 Theobroma cacao HOM05D005771 ORTHO05D007173 2.7e-50 203.4 278 46.0
Gohir.A05G281200 Gossypium hirsutum HOM05D005771 ORTHO05D007173 1.3e-49 201.1 289 46.0
Medtr4g099070 Medicago truncatula HOM05D005771 ORTHO05D007173 1.3e-49 201.1 289 42.9
ClCG10G001970 Citrullus lanatus HOM05D005771 ORTHO05D007173 3.8e-49 199.5 303 43.6
Hund11296 Selenicereus undatus HOM05D005771 ORTHO05D007173 3.8e-49 199.5 285 42.5
Actinidia31481 Actinidia chinensis HOM05D005771 ORTHO05D007173 5.0e-49 199.1 268 45.9
FAN18G3681 Fragaria x ananassa HOM05D005771 ORTHO05D007173 5.0e-49 199.1 334 41.9
CiPaw.12G058800 Carya illinoinensis HOM05D005771 ORTHO05D007173 6.5e-49 198.7 333 42.0
Oeu006260.1 Olea europaea HOM05D005771 ORTHO05D007173 8.5e-49 198.4 308 44.8
Actinidia10872 Actinidia chinensis HOM05D005771 ORTHO05D007173 1.1e-48 198.0 302 42.7
Eucgr.D02148 Eucalyptus grandis HOM05D005771 ORTHO05D007173 1.9e-48 197.2 296 43.6
Sc01g0007800 Simmondsia chinensis HOM05D005771 ORTHO05D007173 1.9e-48 197.2 288 43.8
Glyma.05G068200 Glycine max HOM05D005771 ORTHO05D007173 2.5e-48 196.8 294 41.8
Cc08_g01580 Coffea canephora HOM05D005771 ORTHO05D007173 3.2e-48 196.4 316 43.7
Manes.15G171600 Manihot esculenta HOM05D005771 ORTHO05D007173 3.2e-48 196.4 341 41.1
COL.COLO4_05118 Corchorus olitorius HOM05D005771 ORTHO05D007173 4.2e-48 196.1 281 44.1
FAN08G3334 Fragaria x ananassa HOM05D005771 ORTHO05D007173 4.2e-48 196.1 338 41.1
Phvul.003G227100 Phaseolus vulgaris HOM05D005771 ORTHO05D007173 4.2e-48 196.1 290 42.8
Lalb_Chr05g0220751 Lupinus albus HOM05D005771 ORTHO05D007173 9.4e-48 194.9 281 43.4
Lalb_Chr16g0386311 Lupinus albus HOM05D005771 ORTHO05D007173 9.4e-48 194.9 278 44.2
FAN04G1778 Fragaria x ananassa HOM05D005771 ORTHO05D007173 1.2e-47 194.5 333 41.4
Glyma.17G150800 Glycine max HOM05D005771 ORTHO05D007173 1.2e-47 194.5 293 41.3
arahy.Tifrunner.gnm1.ann1.2CCA8K Arachis hypogaea HOM05D005771 ORTHO05D007173 2.1e-47 193.7 303 40.3
arahy.Tifrunner.gnm1.ann1.X1SA4Y Arachis hypogaea HOM05D005771 ORTHO05D007173 2.1e-47 193.7 303 40.3
TWI60G1113 Tripterygium wilfordii HOM05D005771 ORTHO05D007173 6.1e-47 192.2 299 42.1
Haze_08321 Corylus avellana HOM05D005771 ORTHO05D007173 1.4e-46 191.0 367 39.2
Sopen08g026040 Solanum pennellii HOM05D005771 ORTHO05D007173 1.8e-46 190.7 280 43.9
Sabra03G0055800 Salix brachista HOM05D005771 ORTHO05D007173 2.3e-46 190.3 338 40.8
Lj4g0020972 Lotus japonicus HOM05D005771 ORTHO05D007173 3.0e-46 189.9 301 41.5
Duzib106G1532 Durio zibethinus HOM05D005771 ORTHO05D007173 4.0e-46 189.5 291 42.6
Lj2g0023107 Lotus japonicus HOM05D005771 ORTHO05D007173 5.2e-46 189.1 300 41.0
Nitab4.5_0001444g0090 Nicotiana tabacum HOM05D005771 ORTHO05D007173 6.8e-46 188.7 289 43.9
Solyc08g077450.4 Solanum lycopersicum HOM05D005771 ORTHO05D007173 1.2e-45 188.0 280 43.6
DCAR_000726 Daucus carota HOM05D005771 ORTHO05D007173 2.6e-45 186.8 309 39.5
Migut.E00856 Erythranthe guttata HOM05D005771 ORTHO05D007173 2.6e-45 186.8 324 39.5
Migut.E00807 Erythranthe guttata HOM05D005771 ORTHO05D007173 5.7e-45 185.7 324 39.2
Gorai.011G213100 Gossypium raimondii HOM05D005771 ORTHO05D007173 7.5e-45 185.3 286 42.7
Gohir.A10G183200 Gossypium hirsutum HOM05D005771 ORTHO05D007173 1.3e-44 184.5 302 41.4
Aqoxy3G02583 Aquilegia oxysepala HOM05D005771 ORTHO05D007173 1.7e-44 184.1 296 43.2
Nitab4.5_0001708g0070 Nicotiana tabacum HOM05D005771 ORTHO05D007173 2.2e-44 183.7 322 41.6
Gohir.D10G190000 Gossypium hirsutum HOM05D005771 ORTHO05D007173 4.9e-44 182.6 287 42.5
HanXRQChr12g0368601 Helianthus annuus HOM05D005771 ORTHO05D007173 4.9e-44 182.6 254 44.1
Sed0018056 Sechium edule HOM05D005771 ORTHO05D007173 8.3e-44 181.8 297 41.8
TPR.G11182 Trifolium pratense HOM05D005771 ORTHO05D007173 1.1e-43 181.4 352 37.2
CsaV3_3G002100 Cucumis sativus L. HOM05D005771 ORTHO05D007173 7.7e-42 175.3 336 39.6
CSS0003087 Camellia sinensis var. sinensis HOM05D005771 ORTHO05D007173 3.8e-41 172.9 313 39.0
DCAR_000728 Daucus carota HOM05D005771 ORTHO05D007173 8.6e-41 171.8 320 37.5
MSTRG.1962 Avicennia marina HOM05D005771 ORTHO05D007173 1.9e-40 170.6 294 40.8
Rhsim07G0120600 Rhododendron simsii HOM05D005771 ORTHO05D007173 2.5e-40 170.2 376 37.0
HPP92_007338 Vanilla planifolia HOM05D005771 ORTHO05D007173 9.5e-40 168.3 288 40.6
ECA233G5206 Erigeron canadensis HOM05D005771 ORTHO05D007173 2.1e-39 167.2 286 40.9
Lsat_1_v5_gn_6_67960 Lactuca sativa HOM05D005771 ORTHO05D007173 2.8e-39 166.8 262 40.8
SGA_v2.0_scaffold20G09242 Striga asiatica HOM05D005771 ORTHO05D007173 2.8e-39 166.8 313 39.9
Cpa.g.sc2.371 Carica papaya HOM05D005771 ORTHO05D007173 1.0e-38 164.9 229 45.9
GSVIVG01013265001 Vitis vinifera HOM05D005771 ORTHO05D007173 5.2e-38 162.5 162 53.1
PSO063G1478 Papaver somniferum HOM05D005771 ORTHO05D007173 3.4e-37 159.8 327 36.1
CDE02G0742 Ceratophyllum demersum HOM05D005771 ORTHO05D007173 1.7e-36 157.5 280 38.2
MELO3C013882.2 Cucumis melo HOM05D005771 ORTHO05D007173 1.7e-36 157.5 369 34.1
PSO782G3090 Papaver somniferum HOM05D005771 ORTHO05D007173 4.9e-36 156.0 293 38.2
VMungo0251G2395 Vigna mungo HOM05D005771 ORTHO05D007173 4.9e-36 156.0 212 45.8
Peaxi162Scf00084g00314 Petunia axillaris HOM05D005771 ORTHO05D007173 1.1e-35 154.8 287 39.4
vmacro14112 Vaccinium macrocarpon HOM05D005771 ORTHO05D007173 1.1e-35 154.8 213 46.5
Psat4g077240 Pisum sativum HOM05D005771 ORTHO05D007173 3.2e-35 153.3 198 46.5
Sabra01G0116900 Salix brachista HOM05D005771 ORTHO05D007173 5.4e-35 152.5 223 45.7
AUR62018795 Chenopodium quinoa HOM05D005771 ORTHO05D007173 1.6e-34 151.0 253 39.9
Oeu039354.1 Olea europaea HOM05D005771 ORTHO05D007173 3.5e-34 149.8 207 47.8
AUR62007206 Chenopodium quinoa HOM05D005771 ORTHO05D007173 5.9e-34 149.1 256 39.1
unitig_21.g20376 Utricularia gibba HOM05D005771 ORTHO05D007173 7.8e-34 148.7 341 37.0
CDE11G1022 Ceratophyllum demersum HOM05D005771 ORTHO05D007173 3.0e-33 146.7 315 34.9
ATR0829G207 Amborella trichopoda HOM05D005771 ORTHO05D007173 1.5e-32 144.4 307 35.5
EL10Ac5g12212 Beta vulgaris HOM05D005771 ORTHO05D007173 3.6e-31 139.8 273 37.4
Os08g0129500 Oryza sativa ssp. japonica HOM05D005771 ORTHO05D007173 6.8e-30 135.6 319 33.9
Zm00001eb261700 Zea mays HOM05D005771 ORTHO05D007173 2.9e-28 130.2 309 33.0
FAN13G3323 Fragaria x ananassa HOM05D005771 ORTHO05D007173 4.1e-27 126.3 323 34.1
Sabra01G0118400 Salix brachista HOM05D005771 ORTHO05D007173 1.5e-24 117.9 223 40.4
Ah.07g199650 Amaranthus hybridus HOM05D005771 ORTHO05D007173 1.4e-22 111.3 312 31.7
TPR.G12459 Trifolium pratense HOM05D005771 ORTHO05D007173 4.4e-21 106.3 147 46.9
SEGI_22059 Sequoiadendron giganteum HOM05D005771 ORTHO05D000001 9.2e-19 98.6 196 35.2
TAR636G0006 Trochodendron aralioides HOM05D005771 ORTHO05D007173 1.2e-10 71.6 46 71.7
Zm00001eb173270 Zea mays HOM05D005771 ORTHO05D007173 1.3e-09 68.2 162 34.6
Mapoly0082s0082 Marchantia polymorpha HOM05D005771 ORTHO05D007173 3.9e-09 66.6 202 29.2
SEGI_34267 Sequoiadendron giganteum HOM05D005771 ORTHO05D007173 1.4e-06 58.2 52 57.7
Psat4g077280 Pisum sativum HOM05D005771 ORTHO05D007173 2.4e-06 57.4 30 76.7


User provided reference genes

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