Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 1.6e-80 302.8 157 100.0
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 1.6e-80 302.8 157 100.0
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 7.9e-80 300.4 157 99.4
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 2.6e-67 258.8 158 87.3
A05p23830 Brassica napus HOM05D010872 ORTHO05D013672 6.5e-66 254.2 158 88.0
BraA05t21254Z Brassica rapa HOM05D010872 ORTHO05D013672 6.5e-66 254.2 158 88.0
Sp1g29940 Schrenkiella parvula HOM05D010872 ORTHO05D013672 5.0e-50 201.4 161 70.2
Thhalv10001870m.g Eutrema salsugineum HOM05D010872 ORTHO05D013672 6.7e-39 164.5 145 66.2
AL1G49920 Arabidopsis lyrata HOM05D010872 ORTHO05D013672 4.1e-36 155.2 168 59.5
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 4.1e-36 155.2 162 62.3
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 4.1e-36 155.2 149 63.1
CARHR287280 Cardamine hirsuta HOM05D010872 ORTHO05D013672 1.1e-33 147.1 157 62.4
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 9.1e-20 100.9 136 49.3
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 1.9e-17 93.2 134 46.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.1e-09 67.4 149 40.3
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 1.2e-08 63.9 106 42.5
Aa31LG7G6390 Aethionema arabicum HOM05D009138 ORTHO05D011294 2.1e-08 63.2 88 45.5
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 6.1e-08 61.6 126 38.9
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.0e-07 60.8 128 38.3
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.4e-07 60.5 150 34.7
Sp1g19950 Schrenkiella parvula HOM05D009138 ORTHO05D011294 1.4e-07 60.5 96 45.8
A09p42310 Brassica napus HOM05D009138 ORTHO05D011294 5.2e-07 58.5 97 41.2
BraA09t39712Z Brassica rapa HOM05D009138 ORTHO05D011294 5.2e-07 58.5 97 41.2
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 5.2e-07 58.5 118 39.8
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 6.8e-07 58.2 130 38.5
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 6.8e-07 58.2 46 50.0
AT1G72240 Arabidopsis thaliana HOM05D009138 ORTHO05D011294 8.9e-07 57.8 77 48.1
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 8.9e-07 57.8 98 39.8
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 8.9e-07 57.8 136 33.1
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 8.9e-07 57.8 141 34.8
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.2e-06 57.4 135 35.6
Thhalv10009293m.g Eutrema salsugineum HOM05D009138 ORTHO05D011294 2.0e-06 56.6 88 46.6
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 3.4e-06 55.8 35 71.4
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 3.4e-06 55.8 45 48.9
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 4.4e-06 55.5 129 35.7
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 5.8e-06 55.1 119 38.7
C02p29610 Brassica napus HOM05D009138 ORTHO05D011294 7.5e-06 54.7 102 41.2
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 9.8e-06 54.3 140 34.3
SGA_v2.0_scaffold115G32090 Striga asiatica HOM05D010872 ORTHO05D004477 9.8e-06 54.3 67 52.2


User provided reference genes

Program Settings