Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 6.0e-76 287.3 136 100.0
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 6.0e-76 287.3 136 100.0
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 6.0e-76 287.3 136 100.0
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 6.0e-76 287.3 136 100.0
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 1.0e-75 286.6 136 98.5
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 1.3e-75 286.2 136 99.3
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 1.3e-75 286.2 136 99.3
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 1.7e-75 285.8 136 99.3
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 2.3e-75 285.4 136 99.3
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 6.6e-75 283.9 136 97.8
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 3.1e-72 275.0 136 93.4
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.2e-70 268.9 136 91.2
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 88.2
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 7.1e-69 263.8 136 89.7
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.0e-67 260.0 136 87.5
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 87.5
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.3e-67 259.6 136 86.8
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 87.5
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.7e-67 259.2 136 87.5
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 86.8
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 2.3e-67 258.8 136 86.0
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 3.0e-67 258.5 136 86.8
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 3.9e-67 258.1 136 86.8
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 6.6e-67 257.3 134 88.8
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 6.6e-67 257.3 135 86.7
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 85.3
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 85.3
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 8.6e-67 256.9 136 85.3
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 1.5e-66 256.1 136 86.0
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 85.2
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.9e-66 255.8 136 86.0
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 86.0
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 2.5e-66 255.4 136 85.3
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.3e-66 254.6 133 85.7
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 85.3
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 4.3e-66 254.6 136 84.6
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 84.6
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 84.6
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 84.6
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.6e-66 254.2 136 84.6
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 83.8
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 86.0
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 7.3e-66 253.8 135 85.2
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 7.3e-66 253.8 136 84.6
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.2e-65 253.1 136 83.8
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 1.6e-65 252.7 135 84.4
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.6e-65 252.7 136 83.8
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.8e-65 251.9 136 84.6
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 85.9
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 83.8
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 83.8
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 3.6e-65 251.5 136 84.6
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 4.7e-65 251.1 135 81.5
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 4.7e-65 251.1 135 84.4
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 6.2e-65 250.8 136 83.1
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 8.1e-65 250.4 136 83.1
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 83.7
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 1.1e-64 250.0 124 92.7
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.1e-64 250.0 136 81.6
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 82.4
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.4e-64 249.6 136 83.1
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 2.4e-64 248.8 136 83.1
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 84.6
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.1
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 3.1e-64 248.4 136 83.8
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 83.8
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 4.0e-64 248.1 136 82.4
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 83.1
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 83.1
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 83.8
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 83.8
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 5.2e-64 247.7 136 84.6
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 8.9e-64 246.9 136 83.8
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 83.8
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.2e-63 246.5 136 83.1
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 1.5e-63 246.1 136 82.4
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 84.6
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.6e-63 245.4 136 83.1
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 3.4e-63 245.0 136 83.1
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 3.4e-63 245.0 136 83.1
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 1.3e-62 243.0 136 83.8
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 6.4e-62 240.7 132 84.1
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.9e-61 239.2 138 79.7
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 2.1e-60 235.7 120 95.0
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 2.7e-60 235.3 135 78.5
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 4.6e-60 234.6 124 87.9
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 1.1e-58 229.9 129 81.4
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 4.3e-58 228.0 121 92.6
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 4.3e-58 228.0 131 77.9
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 4.3e-58 228.0 124 81.5
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 9.6e-58 226.9 124 82.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 1.2e-57 226.5 119 87.4
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 3.6e-57 224.9 124 87.1
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.6e-57 224.9 130 80.0
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 3.6e-57 224.9 124 82.3
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.6e-55 218.8 124 80.6
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 2.6e-55 218.8 138 73.2
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.4e-55 218.4 133 72.9
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 4.4e-55 218.0 133 73.7
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.7e-54 216.1 137 69.3
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 4.9e-54 214.5 138 72.5
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 6.4e-54 214.2 133 71.4
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 8.4e-54 213.8 133 70.7
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 1.9e-53 212.6 206 53.4
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 3.5e-52 208.4 135 68.1
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 8.7e-51 203.8 136 69.9
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 9.6e-50 200.3 132 67.4
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.1e-48 196.8 136 66.2
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 6.9e-48 194.1 134 65.7
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.7e-46 189.5 153 62.1
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 8.7e-43 177.2 128 63.3
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.8e-41 172.2 92 87.0
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 1.1e-40 170.2 125 68.8
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 5.3e-40 167.9 74 100.0
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 5.3e-40 167.9 74 100.0
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 6.0e-36 154.5 92 73.9
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 2.3e-35 152.5 76 85.5
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 3.3e-34 148.7 91 74.7
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.3e-34 148.7 74 85.1
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 3.3e-34 148.7 74 85.1
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 7.4e-34 147.5 75 82.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.6e-33 146.4 75 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.4e-32 142.5 74 81.1
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.2e-30 136.0 73 78.1
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 3.8e-30 135.2 88 71.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 6.7e-27 124.4 140 51.4
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.5e-26 122.5 131 42.0
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 5.9e-23 111.3 72 75.0
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 1.9e-18 96.3 117 44.4
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 2.8e-17 92.4 50 92.0
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 8.2e-17 90.9 47 78.7
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 3.4e-15 85.5 165 37.6
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 6.7e-11 71.2 70 57.1
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 8.2e-09 64.3 35 71.4
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.1e-08 62.4 67 49.3
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 8.5e-06 54.3 141 28.4


User provided reference genes

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