Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 2.4e-93 345.5 178 100.0
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 2.4e-93 345.5 178 100.0
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 2.4e-93 345.5 178 100.0
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 2.0e-92 342.4 178 98.9
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 7.8e-92 340.5 178 98.3
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 1.5e-87 326.2 178 92.7
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.9e-78 295.4 176 85.2
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 6.4e-78 294.3 176 84.7
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.9e-77 292.7 175 85.1
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 3.5e-76 288.5 175 83.4
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 4.6e-76 288.1 175 82.9
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 1.0e-75 287.0 176 83.5
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 6.6e-75 284.3 176 83.0
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 6.6e-75 284.3 176 81.8
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 1.9e-74 282.7 176 81.8
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 1.9e-74 282.7 176 81.8
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 2.1e-73 279.3 176 81.8
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 3.6e-73 278.5 176 80.7
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 8.9e-72 273.9 163 85.3
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 3.7e-49 198.7 177 55.4
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.4e-45 186.0 172 55.8
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.2e-44 183.7 172 55.2
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 6.0e-44 181.4 178 52.2
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 7.9e-44 181.0 172 54.7
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.0e-40 168.7 173 52.0
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 3.6e-28 129.0 175 39.4
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 3.9e-27 125.6 175 38.9
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 8.8e-27 124.4 175 39.4
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.7e-25 120.2 175 38.3
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.7e-25 120.2 169 38.5
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.7e-25 120.2 169 38.5
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.7e-25 120.2 169 38.5
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.7e-25 120.2 169 38.5
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 1.7e-25 120.2 175 39.4
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 2.2e-25 119.8 169 39.1
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 2.8e-25 119.4 169 38.5
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 4.8e-25 118.6 173 39.9
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 6.3e-25 118.2 171 38.0
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.4e-24 116.3 175 37.7
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 6.5e-22 108.2 183 37.2
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.5e-21 106.3 168 35.7
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.4e-19 100.5 181 36.5
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 8.8e-19 97.8 176 35.8
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 2.0e-18 96.7 184 33.7
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 2.6e-18 96.3 162 34.0
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 1.3e-17 94.0 146 37.0
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.8e-17 92.0 159 33.3
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-16 90.1 159 34.0
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 3.1e-16 89.4 154 33.1
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.3e-16 88.6 159 33.3
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-15 87.0 171 32.2
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-15 86.7 159 32.1
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.0e-15 86.7 156 33.3
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.5e-15 85.5 165 32.1
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.5e-15 85.5 157 31.8
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.5e-15 85.5 169 33.1
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.5e-15 85.5 169 33.1
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-14 84.3 183 31.1
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 171 32.2
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.3e-14 84.0 157 31.8
A03p29810 Brassica napus HOM05D008385 ORTHO05D001819 2.2e-14 83.2 177 29.4
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-14 83.2 159 31.4
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-14 83.2 159 31.4
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 159 31.4
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 164 30.5
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 3.8e-14 82.4 176 29.5
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 141 33.3
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.5e-14 81.3 159 32.1
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 8.5e-14 81.3 165 35.2
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-13 80.9 171 31.0
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.1e-13 80.9 149 31.5
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-13 80.5 159 30.8
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 1.4e-13 80.5 165 33.3
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-13 80.1 159 30.8
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.9e-13 80.1 158 31.0
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 1.9e-13 80.1 165 33.3
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 1.9e-13 80.1 158 32.3
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 1.9e-13 80.1 168 29.2
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 2.5e-13 79.7 165 30.3
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-13 79.7 159 30.2
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-13 79.7 159 31.4
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-13 79.7 155 33.5
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 3.2e-13 79.3 145 36.6
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.5e-13 78.6 160 31.9
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 7.2e-13 78.2 177 30.5
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 9.4e-13 77.8 170 34.1
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.4e-13 77.8 161 30.4
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.4e-13 77.8 150 31.3
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 1.2e-12 77.4 173 31.2
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 1.2e-12 77.4 170 31.2
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-12 77.0 161 30.4
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-12 77.0 160 32.5
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-12 76.6 159 29.6
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 2.7e-12 76.3 167 32.3
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 2.7e-12 76.3 166 31.3
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 4.7e-12 75.5 165 33.3
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 6.1e-12 75.1 165 30.9
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 159 28.9
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 1.8e-11 73.6 161 31.7
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.8e-11 73.6 147 32.0
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-11 73.6 170 29.4
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 1.8e-11 73.6 165 32.7
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 2.3e-11 73.2 156 32.1
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.9e-11 72.4 157 28.7
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-11 72.4 170 29.4
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.9e-11 72.4 173 29.5
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 5.2e-11 72.0 165 34.5
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 6.7e-11 71.6 180 31.1
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 8.8e-11 71.2 165 30.9
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 1.1e-10 70.9 150 30.7
Thecc.10G106100 Theobroma cacao HOM05D015467 ORTHO05D001819 1.1e-10 70.9 187 28.9
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.4e-10 68.9 132 28.0
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.4e-10 68.9 156 28.2
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 7.4e-10 68.2 151 29.1
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 9.7e-10 67.8 171 27.5
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 9.7e-10 67.8 145 31.0
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 1.3e-09 67.4 168 28.6
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-09 66.6 126 31.7
ClCG07G004740 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.7e-09 65.9 162 27.8
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 4.8e-09 65.5 151 27.8
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 6.3e-09 65.1 130 33.8
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 6.3e-09 65.1 130 33.8
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 6.3e-09 65.1 151 30.5
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 8.2e-09 64.7 121 30.6
A01p14680 Brassica napus HOM05D008385 ORTHO05D010806 2.4e-08 63.2 184 26.6
C01p18170 Brassica napus HOM05D008385 ORTHO05D010806 2.4e-08 63.2 184 26.6
C01p18190 Brassica napus HOM05D008385 ORTHO05D010806 2.4e-08 63.2 184 26.6
BolC1t01744H Brassica oleracea HOM05D008385 ORTHO05D010806 2.4e-08 63.2 184 26.6
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-08 62.8 126 30.2
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.1e-08 62.8 118 31.4
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 3.1e-08 62.8 163 29.4
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 3.1e-08 62.8 163 29.4
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 5.3e-08 62.0 150 26.7
MSTRG.10815 Avicennia marina HOM05D011410 ORTHO05D013015 5.3e-08 62.0 164 26.2
CAN.G338.43 Capsicum annuum HOM05D003146 ORTHO05D001819 7.0e-08 61.6 131 29.0
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.0e-08 61.6 136 31.6
COL.COLO4_04545 Corchorus olitorius HOM05D015467 ORTHO05D001819 9.1e-08 61.2 156 25.6
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 1.6e-07 60.5 143 28.0
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 1.6e-07 60.5 143 28.0
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 1.6e-07 60.5 142 28.2
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 2.0e-07 60.1 143 28.0
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 2.6e-07 59.7 151 23.8
Rhsim07G0138100 Rhododendron simsii HOM05D009438 ORTHO05D010870 3.5e-07 59.3 147 25.9
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.5e-07 58.9 111 31.5
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 4.5e-07 58.9 137 27.7
CsaV3_6G021230 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.9e-07 58.5 168 26.2
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.7e-07 58.2 111 32.4
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.7e-07 58.2 111 32.4
Dinv22854 Davidia involucrata HOM05D009438 ORTHO05D010870 7.7e-07 58.2 178 26.4
Medtr6g024020 Medicago truncatula HOM05D007995 ORTHO05D001819 7.7e-07 58.2 170 25.9
Potri.003G123500 Populus trichocarpa HOM05D000281 ORTHO05D009440 7.7e-07 58.2 155 26.5
COL.COLO4_11312 Corchorus olitorius HOM05D015467 ORTHO05D001819 1.0e-06 57.8 171 26.3
THA.LOC104802647 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-06 57.8 176 25.0
COL.COLO4_24558 Corchorus olitorius HOM05D015467 ORTHO05D001819 1.3e-06 57.4 171 27.5
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.7e-06 57.0 164 28.0
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 1.7e-06 57.0 161 23.6
COL.COLO4_04546 Corchorus olitorius HOM05D015467 ORTHO05D001819 2.2e-06 56.6 156 26.9
COL.COLO4_24557 Corchorus olitorius HOM05D015467 ORTHO05D001819 2.9e-06 56.2 174 28.2
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-06 56.2 86 32.6
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 2.9e-06 56.2 176 26.1
AL1G54520 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.8e-06 55.8 120 28.3
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 3.8e-06 55.8 158 24.1
Lj3g0018744 Lotus japonicus HOM05D007995 ORTHO05D001819 3.8e-06 55.8 129 28.7
QL04p033186 Quercus lobata HOM05D003146 ORTHO05D001819 3.8e-06 55.8 153 26.1
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 6.5e-06 55.1 157 26.8
MBI13_g01658_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000095 8.5e-06 54.7 190 27.4


User provided reference genes

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