Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 3.1e-37 157.9 77 100.0
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 3.1e-37 157.9 77 100.0
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 9.0e-37 156.4 77 98.7
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 5.3e-13 77.4 45 82.2
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 6.9e-13 77.0 45 84.4
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 9.1e-13 76.6 45 82.2
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.0e-12 75.5 45 84.4
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.0e-12 75.5 45 82.2
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 2.0e-12 75.5 45 80.0
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 2.0e-12 75.5 45 80.0
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 4.5e-12 74.3 45 80.0
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 4.5e-12 74.3 45 80.0
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 4.5e-12 74.3 45 80.0
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 7.7e-12 73.6 45 77.8
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 7.7e-12 73.6 45 77.8
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.2e-11 72.0 45 80.0
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 3.8e-11 71.2 45 77.8
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 5.0e-11 70.9 45 75.6
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 8.5e-11 70.1 45 77.8
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.1e-10 69.7 45 75.6
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 2.5e-10 68.6 45 71.1
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.5e-10 68.6 45 71.1
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 2.5e-10 68.6 45 75.6
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.2e-10 68.2 45 73.3
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.2e-10 68.2 45 75.6
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 4.2e-10 67.8 45 73.3
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 4.2e-10 67.8 45 71.1
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 4.2e-10 67.8 45 75.6
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.5e-10 67.4 45 73.3
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 5.5e-10 67.4 45 75.6
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 7.2e-10 67.0 45 68.9
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 7.2e-10 67.0 45 75.6
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 7.2e-10 67.0 45 75.6
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 7.2e-10 67.0 44 72.7
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 7.2e-10 67.0 45 73.3
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 9.4e-10 66.6 45 68.9
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 9.4e-10 66.6 45 68.9
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 9.4e-10 66.6 45 68.9
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-09 66.2 45 71.1
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-09 66.2 45 71.1
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 1.2e-09 66.2 45 71.1
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 1.2e-09 66.2 45 73.3
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.2e-09 66.2 45 73.3
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.6e-09 65.9 45 71.1
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.1e-09 65.5 45 66.7
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.1e-09 65.5 45 68.9
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.1e-09 65.5 44 70.5
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.1e-09 65.5 44 70.5
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.1e-09 65.5 45 71.1
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 66.7
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 71.1
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 71.1
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 66.7
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 68.9
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 68.9
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 71.1
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.7e-09 65.1 45 66.7
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 68.9
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 68.9
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 66.7
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 71.1
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 68.9
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 68.9
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 71.1
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 68.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 3.6e-09 64.7 45 66.7
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 4.6e-09 64.3 45 66.7
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 6.1e-09 63.9 45 62.2
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 6.1e-09 63.9 45 64.4
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 7.9e-09 63.5 45 68.9
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 7.9e-09 63.5 45 66.7
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 7.9e-09 63.5 45 64.4
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.0e-08 63.2 45 68.9
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-08 62.8 45 64.4
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.8e-08 62.4 45 66.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.8e-08 62.4 45 68.9
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 2.3e-08 62.0 45 64.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 2.3e-08 62.0 45 66.7
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 2.3e-08 62.0 45 66.7
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.3e-08 62.0 45 66.7
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 2.3e-08 62.0 45 66.7
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 3.9e-08 61.2 45 64.4
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.9e-08 61.2 45 64.4
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.9e-08 61.2 45 64.4
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 6.7e-08 60.5 45 60.0
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 6.7e-08 60.5 45 62.2
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 6.7e-08 60.5 45 62.2
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 6.7e-08 60.5 45 60.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 6.7e-08 60.5 45 64.4
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 8.8e-08 60.1 45 64.4
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 8.8e-08 60.1 45 60.0
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 8.8e-08 60.1 45 55.6
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.1e-07 59.7 45 64.4
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 2.0e-07 58.9 45 62.2
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 2.0e-07 58.9 45 64.4
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 3.3e-07 58.2 45 60.0
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.3e-07 58.2 45 64.4
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.3e-07 58.2 45 62.2
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 8.2e-06 53.5 45 55.6


User provided reference genes

Program Settings