Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.1e-179 633.3 323 100.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.1e-179 633.3 323 100.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 6.8e-179 630.6 323 99.7
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 2.6e-178 628.6 323 99.1
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 8.3e-177 623.6 323 98.8
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.6e-175 617.8 323 96.9
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 3.8e-169 598.2 323 93.8
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 5.6e-165 584.3 345 89.9
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 5.4e-160 567.8 325 89.5
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.2e-152 542.0 325 84.9
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 9.9e-146 520.4 326 82.8
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.2e-145 519.2 325 82.2
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 6.4e-145 517.7 325 80.6
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.0e-142 510.4 325 79.7
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 5.5e-136 488.0 323 77.1
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.2e-127 460.3 301 80.4
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.1e-123 447.2 325 69.8
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 9.8e-93 344.4 179 97.2
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 9.8e-93 344.4 179 97.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 6.3e-92 341.7 334 56.0
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.4e-91 340.5 327 55.7
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 2.4e-91 339.7 323 53.6
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.6e-90 337.0 336 55.1
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 7.7e-90 334.7 331 55.0
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 1.0e-89 334.3 334 55.7
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.0e-89 334.3 336 54.2
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.3e-89 334.0 333 55.0
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.3e-89 334.0 334 55.4
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.7e-89 333.6 334 54.8
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 2.3e-89 333.2 333 54.1
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.8e-89 332.4 332 53.9
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.5e-89 331.6 332 53.9
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.1e-88 330.9 334 54.5
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 5.5e-88 328.6 334 53.9
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 9.5e-88 327.8 334 53.0
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.2e-87 327.4 332 52.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 2.1e-87 326.6 333 54.1
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.8e-87 326.2 325 55.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 4.7e-87 325.5 332 52.1
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 6.1e-87 325.1 321 52.6
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 8.0e-87 324.7 334 52.1
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.0e-86 324.3 334 52.7
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.0e-86 324.3 330 52.4
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 1.4e-86 323.9 335 51.0
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 3.0e-86 322.8 330 53.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.0e-86 322.4 332 51.5
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 4.0e-86 322.4 334 52.1
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 4.0e-86 322.4 332 51.2
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 4.0e-86 322.4 332 51.2
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 5.2e-86 322.0 326 49.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 6.8e-86 321.6 325 50.8
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 8.9e-86 321.2 326 50.6
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 8.9e-86 321.2 326 52.5
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.2e-85 320.9 332 52.7
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.2e-85 320.9 332 50.6
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.6e-85 319.7 333 54.1
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.3e-84 317.4 332 51.8
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 2.8e-84 316.2 333 50.2
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.8e-84 316.2 338 52.7
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 6.3e-84 315.1 332 52.4
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 8.3e-84 314.7 332 50.3
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.1e-83 314.3 334 51.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.8e-83 313.5 327 53.5
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 3.1e-83 312.8 333 53.5
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.1e-83 312.4 333 51.4
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 5.4e-83 312.0 332 49.4
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 5.4e-83 312.0 323 53.9
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 9.2e-83 311.2 338 51.2
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 9.2e-83 311.2 319 51.7
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.6e-82 310.5 338 50.9
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.0e-82 310.1 338 50.9
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.0e-81 307.8 306 52.9
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.3e-81 306.6 292 53.4
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 3.3e-80 302.8 331 49.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 7.3e-80 301.6 333 48.3
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 2.1e-79 300.1 332 49.1
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.8e-79 299.7 334 51.5
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 6.1e-79 298.5 319 49.2
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 1.4e-78 297.4 331 48.9
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.0e-78 296.2 328 49.7
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 6.8e-78 295.0 332 49.4
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 8.9e-78 294.7 331 47.1
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.2e-77 294.3 333 48.3
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 7.5e-77 291.6 333 47.1
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 6.4e-76 288.5 325 48.6
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 8.3e-76 288.1 313 50.5
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.4e-75 287.3 326 48.8
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 3.2e-75 286.2 358 46.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 3.5e-74 282.7 285 53.7
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 4.3e-72 275.8 191 75.4
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.2e-71 274.2 332 47.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.2e-71 274.2 325 48.6
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 8.9e-70 268.1 333 46.8
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.5e-69 267.3 352 42.9
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.7e-68 263.8 309 47.6
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 2.4e-67 260.0 326 46.0
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.0e-65 254.6 204 67.6
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.3e-65 254.2 320 47.8
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.6e-65 251.5 260 52.7
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.8e-63 246.5 320 41.9
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.4e-62 244.2 312 44.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.6e-61 240.0 312 42.9
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 5.4e-59 232.3 322 44.1
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 9.2e-59 231.5 233 53.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 6.4e-52 208.8 326 40.5
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 5.4e-51 205.7 241 46.1
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.1e-47 193.7 302 39.4
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 6.4e-44 182.2 126 74.6
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 5.4e-43 179.1 319 35.7
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.0e-41 174.9 205 47.3
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-40 171.4 326 35.0
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.5e-40 171.0 342 33.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.9e-40 170.6 301 35.5
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.3e-36 157.9 184 47.8
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.5e-32 144.4 176 48.3
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.8e-25 120.9 147 43.5
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.7e-23 113.2 124 48.4
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.4e-22 110.5 118 46.6
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 9.0e-22 108.6 309 30.4
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 1.5e-21 107.8 298 29.9
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.3e-17 94.0 138 43.5
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.0e-17 93.6 157 40.1
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 3.9e-17 93.2 86 57.0
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.4e-13 80.1 84 52.4
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.8e-06 57.8 65 46.2


User provided reference genes

Program Settings