Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 7.1e-130 467.2 230 100.0
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 7.1e-130 467.2 230 100.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 7.4e-127 457.2 230 97.8
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 7.4e-127 457.2 234 97.4
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 7.4e-127 457.2 230 97.8
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.6e-116 422.2 233 91.0
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 4.5e-108 394.8 239 82.8
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 2.8e-102 375.6 240 80.4
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 4.1e-101 371.7 238 81.9
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 2.0e-100 369.4 236 79.7
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 3.6e-97 358.6 241 78.4
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 7.9e-97 357.5 238 78.2
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.0e-84 316.2 229 66.4
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 3.8e-75 285.4 244 59.0
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.0e-72 277.3 226 61.5
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.8e-64 250.0 180 61.7
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 2.0e-63 246.5 232 52.2
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 5.7e-63 245.0 231 51.1
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.3e-62 243.8 231 52.8
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.7e-62 243.4 232 51.3
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 2.2e-62 243.0 187 58.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 3.7e-62 242.3 188 56.9
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 1.1e-61 240.7 227 52.9
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 4.1e-61 238.8 175 64.0
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 4.1e-61 238.8 200 56.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 5.4e-61 238.4 200 56.0
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 7.8e-60 234.6 188 56.4
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.7e-59 233.4 201 52.7
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 2.3e-59 233.0 224 48.7
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 3.3e-58 229.2 175 57.7
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 4.3e-58 228.8 184 55.4
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 5.6e-58 228.4 227 54.2
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 7.3e-58 228.0 189 52.9
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 9.5e-58 227.6 202 53.0
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.1e-57 226.5 180 55.6
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 3.6e-57 225.7 176 55.7
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 3.6e-57 225.7 162 63.6
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 6.1e-57 224.9 183 54.6
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 8.0e-57 224.6 169 59.2
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 1.0e-56 224.2 169 57.4
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.8e-56 223.4 219 52.5
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 2.3e-56 223.0 206 50.5
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 4.0e-56 222.2 172 58.1
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 4.0e-56 222.2 220 47.7
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.0e-56 222.2 197 53.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 5.2e-56 221.9 223 48.9
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 5.2e-56 221.9 169 56.8
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 5.2e-56 221.9 189 52.9
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 6.8e-56 221.5 189 52.4
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.2e-55 220.7 182 55.5
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.2e-55 220.7 169 56.2
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.2e-55 220.7 189 52.9
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.5e-55 220.3 169 56.2
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 1.5e-55 220.3 218 45.4
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 2.6e-55 219.5 169 55.6
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 3.4e-55 219.2 187 52.4
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 3.4e-55 219.2 176 56.8
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 3.4e-55 219.2 174 59.2
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.4e-55 218.8 179 52.5
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 4.4e-55 218.8 188 54.3
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 5.8e-55 218.4 196 52.0
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.7e-54 216.9 188 52.7
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.7e-54 216.9 224 50.4
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.7e-54 216.9 192 47.9
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.9e-54 216.1 228 50.9
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.7e-54 215.7 170 55.3
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 8.3e-54 214.5 214 48.1
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 8.3e-54 214.5 197 50.8
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.1e-53 214.2 215 52.1
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.4e-53 213.0 169 56.8
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.0e-53 211.5 179 50.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 9.2e-53 211.1 195 52.3
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.2e-52 210.7 188 50.0
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.2e-52 210.7 178 54.5
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.2e-52 210.7 173 52.6
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 1.6e-52 210.3 224 43.8
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 3.5e-52 209.1 157 61.1
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.5e-52 209.1 224 43.8
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 4.6e-52 208.8 179 49.2
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 7.8e-52 208.0 224 44.6
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 2.3e-51 206.5 216 45.8
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.9e-50 203.4 170 52.9
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 4.7e-49 198.7 174 49.4
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.1e-48 197.6 183 48.6
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 6.8e-48 194.9 210 43.8
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 8.9e-48 194.5 190 47.4
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.2e-47 194.1 190 47.4
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.5e-47 193.7 185 50.8
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 9.2e-45 184.5 202 46.5
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.6e-39 166.4 154 51.9
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.4e-39 165.6 178 44.4
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.9e-37 160.2 179 43.6
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.2e-36 157.5 125 57.6
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.0e-35 154.5 115 61.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 8.9e-32 141.4 169 44.4
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 3.4e-31 139.4 113 56.6
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.7e-30 137.1 147 46.9
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.9e-27 125.9 100 55.0
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.3e-25 120.9 73 74.0
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.8e-25 119.8 73 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 6.9e-24 115.2 147 38.8
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.4e-21 107.5 137 35.8
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 9.6e-18 94.7 80 51.2
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 6.2e-17 92.0 133 33.1
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 2.4e-16 90.1 68 52.9
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.5e-15 87.4 128 32.0
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 3.4e-15 86.3 181 29.8
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 4.5e-15 85.9 84 46.4
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 7.6e-15 85.1 133 32.3
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 7.6e-15 85.1 135 30.4
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 9.9e-15 84.7 143 37.8
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.3e-14 84.3 168 29.8
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 8.4e-14 81.6 191 27.2
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.4e-13 80.9 135 32.6
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.9e-13 80.5 135 32.6
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.9e-13 80.5 136 32.4
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 3.2e-13 79.7 133 31.6
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.1e-13 78.6 52 63.5
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 3.5e-12 76.3 133 29.3
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 3.5e-12 76.3 135 31.1
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 6.0e-12 75.5 134 32.1
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 7.9e-12 75.1 135 30.4
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.8e-11 73.9 133 30.1
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.8e-11 73.9 161 28.0
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 2.3e-11 73.6 128 27.3
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 3.9e-11 72.8 151 27.2
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 3.9e-11 72.8 161 28.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 5.1e-11 72.4 133 27.8
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 5.1e-11 72.4 128 29.7
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 5.1e-11 72.4 128 30.5
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 6.7e-11 72.0 147 27.9
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 6.7e-11 72.0 133 27.8
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 1.1e-10 71.2 147 27.2
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.1e-10 71.2 128 30.5
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 3.3e-10 69.7 150 24.0
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 4.3e-10 69.3 149 24.8
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 7.4e-10 68.6 103 37.9
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 9.6e-10 68.2 154 27.9
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.3e-09 67.8 132 31.1
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.6e-09 67.4 35 85.7
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 6.2e-09 65.5 149 27.5
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.8e-08 63.9 118 30.5
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 3.1e-08 63.2 117 30.8
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 4.0e-08 62.8 128 28.1
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 5.3e-08 62.4 161 23.0
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 9.0e-08 61.6 167 26.3
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.2e-07 61.2 133 26.3
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 3.4e-07 59.7 128 28.9
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 4.5e-07 59.3 152 26.3
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 2.2e-06 57.0 143 23.8
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 8.4e-06 55.1 109 23.9


User provided reference genes

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