Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 2.3e-28 128.3 67 100.0
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 2.3e-28 128.3 67 100.0
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 2.5e-27 124.8 67 97.0
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 2.5e-27 124.8 67 97.0
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 2.4e-25 118.2 67 91.0
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 1.2e-24 115.9 64 90.6
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 1.5e-24 115.5 65 86.2
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 8.4e-23 109.8 65 84.6
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 1.1e-22 109.4 68 88.2
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 1.1e-22 109.4 68 88.2
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 4.6e-21 104.0 68 86.8
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 4.6e-21 104.0 68 85.3
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 4.6e-21 104.0 68 86.8
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 1.0e-20 102.8 68 83.8
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 1.0e-20 102.8 68 85.3
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 1.9e-19 98.6 58 91.4
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 7.6e-16 86.7 57 82.5
BcaNung04896 Brassica carinata HOM05D007891 ORTHO05D009992 1.4e-14 82.4 57 77.2
BolC8t47912H Brassica oleracea HOM05D007891 ORTHO05D009992 5.5e-14 80.5 57 75.4
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 3.0e-12 74.7 48 77.1
Aa31LG6G7600 Aethionema arabicum HOM05D007891 ORTHO05D009992 8.7e-12 73.2 67 56.7
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 2.1e-10 68.6 62 61.3
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 6.2e-10 67.0 61 57.4
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.1e-09 66.2 60 58.3
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.4e-09 65.9 59 62.7
A08p08750 Brassica napus HOM05D007891 ORTHO05D009992 3.1e-09 64.7 45 80.0
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 3.1e-09 64.7 57 57.9
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 3.1e-09 64.7 60 56.7
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 5.3e-09 63.9 59 59.3
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 9.0e-09 63.2 59 61.0
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 1.2e-08 62.8 55 63.6
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.5e-08 62.4 61 57.4
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 1.5e-08 62.4 61 62.3
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.0e-08 62.0 59 59.3
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.6e-08 61.6 59 59.3
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 2.6e-08 61.6 61 55.7
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 2.6e-08 61.6 59 55.9
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 3.4e-08 61.2 55 60.0
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 5.8e-08 60.5 59 57.6
BraA08t32886Z Brassica rapa HOM05D007891 ORTHO05D009992 7.6e-08 60.1 40 82.5
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 7.6e-08 60.1 59 57.6
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 1.0e-07 59.7 59 59.3
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 1.3e-07 59.3 57 52.6
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 1.7e-07 58.9 53 64.2
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 2.2e-07 58.5 47 59.6
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 2.9e-07 58.2 52 57.7
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 4.9e-07 57.4 45 66.7
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 4.9e-07 57.4 59 54.2
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 8.4e-07 56.6 45 64.4
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 1.1e-06 56.2 70 50.0
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.1e-06 56.2 59 54.2
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.1e-06 56.2 59 54.2
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.4e-06 55.8 45 62.2
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 1.9e-06 55.5 61 47.5
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.9e-06 55.5 59 54.2
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 1.9e-06 55.5 55 58.2
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 2.5e-06 55.1 56 51.8
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 2.5e-06 55.1 61 52.5
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 3.2e-06 54.7 65 47.7
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 3.2e-06 54.7 40 65.0
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 4.2e-06 54.3 62 53.2
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 4.2e-06 54.3 63 50.8
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 7.1e-06 53.5 61 49.2


User provided reference genes

Program Settings