Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 2.4e-79 298.9 165 100.0
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 9.2e-55 217.2 126 98.4
BcaC01g02218 Brassica carinata HOM05D005719 ORTHO05D007030 3.1e-26 122.5 127 60.6
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.9e-20 103.2 87 78.2
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.9e-20 103.2 87 78.2
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 1.9e-20 103.2 87 70.1
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 5.6e-20 101.7 87 69.0
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 7.4e-20 101.3 87 70.1
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 9.6e-20 100.9 87 74.7
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 3.6e-19 99.0 87 73.6
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 4.8e-19 98.6 88 77.3
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 8.1e-19 97.8 87 67.8
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 3.1e-18 95.9 87 67.8
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 2.0e-17 93.2 88 73.9
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 2.0e-17 93.2 88 73.9
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 3.8e-16 89.0 87 69.0
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.4e-16 87.8 126 49.2
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 2.4e-15 86.3 87 56.3
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 8.7e-13 77.8 89 55.1
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.5e-12 77.0 87 52.9
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 1.5e-12 77.0 87 52.9
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 2.5e-12 76.3 88 56.8
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 4.3e-12 75.5 88 52.3
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 7.4e-12 74.7 88 53.4
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 7.4e-12 74.7 88 51.1
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 9.6e-12 74.3 88 52.3
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 1.3e-11 73.9 87 51.7
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.3e-11 73.9 88 52.3
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.3e-11 73.9 88 52.3
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 2.1e-11 73.2 86 51.2
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 2.1e-11 73.2 88 51.1
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.7e-11 72.4 89 52.8
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 4.8e-11 72.0 93 48.4
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 8.1e-11 71.2 90 52.2
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 1.1e-10 70.9 88 50.0
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.1e-10 70.9 89 52.8
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.8e-10 70.1 88 53.4
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.4e-10 69.7 90 52.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 2.4e-10 69.7 89 52.8
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 3.1e-10 69.3 90 51.1
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 3.1e-10 69.3 87 47.1
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 5.3e-10 68.6 88 48.9
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 5.3e-10 68.6 89 50.6
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 6.9e-10 68.2 89 49.4
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 6.9e-10 68.2 88 50.0
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.9e-10 68.2 89 47.2
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 9.0e-10 67.8 88 52.3
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 9.0e-10 67.8 89 50.6
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.2e-09 67.4 87 50.6
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 2.0e-09 66.6 87 48.3
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 2.6e-09 66.2 86 43.0
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.6e-09 66.2 88 51.1
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.4e-09 65.9 90 50.0
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.4e-09 65.9 89 49.4
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 3.4e-09 65.9 89 50.6
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 3.4e-09 65.9 89 49.4
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 3.4e-09 65.9 86 43.0
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.5e-09 65.5 88 51.1
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 5.8e-09 65.1 72 55.6
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 5.8e-09 65.1 87 47.1
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 7.6e-09 64.7 87 48.3
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 7.6e-09 64.7 86 43.0
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.0e-08 64.3 88 47.7
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 1.3e-08 63.9 89 49.4
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.3e-08 63.9 88 47.7
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.7e-08 63.5 43 74.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 1.7e-08 63.5 70 48.6
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.2e-08 63.2 86 47.7
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.2e-08 63.2 87 47.1
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 3.8e-08 62.4 91 45.1
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 6.5e-08 61.6 86 43.0
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 6.5e-08 61.6 86 43.0
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 6.5e-08 61.6 89 44.9
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 6.5e-08 61.6 89 47.2
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 8.4e-08 61.2 91 41.8
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 8.4e-08 61.2 59 57.6
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.4e-07 60.5 88 50.0
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.9e-07 60.1 87 43.7
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.9e-07 60.1 89 43.8
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.5e-07 59.7 88 43.2
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.2e-07 59.3 90 42.2
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.2e-07 59.3 74 54.1
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 5.5e-07 58.5 86 46.5
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 5.5e-07 58.5 86 45.3
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 7.1e-07 58.2 89 47.2
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 7.1e-07 58.2 43 65.1
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.6e-06 57.0 61 55.7
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 1.6e-06 57.0 42 64.3
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.6e-06 57.0 89 46.1
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 2.1e-06 56.6 80 43.8
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 2.7e-06 56.2 85 43.5
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 2.7e-06 56.2 86 43.0
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 3.5e-06 55.8 86 45.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 4.6e-06 55.5 87 46.0
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 6.0e-06 55.1 79 43.0
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 7.9e-06 54.7 71 42.3


User provided reference genes

Program Settings