Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p32030 Brassica napus HOM05D007324 ORTHO05D007884 9.5e-55 216.9 131 100.0
BolC5t31929H Brassica oleracea HOM05D007324 ORTHO05D007884 2.3e-53 212.2 131 98.5
C05p32110 Brassica napus HOM05D007324 ORTHO05D007884 1.1e-42 176.8 131 77.9
BolC5t31940H Brassica oleracea HOM05D007324 ORTHO05D007884 1.1e-42 176.8 131 77.9
Thhalv10009848m.g Eutrema salsugineum HOM05D007324 ORTHO05D007884 2.6e-36 155.6 115 76.5
A09p33650 Brassica napus HOM05D007324 ORTHO05D007884 6.0e-33 144.4 135 76.3
BcaB07g32955 Brassica carinata HOM05D007324 ORTHO05D007884 8.7e-32 140.6 115 72.2
BcaC05g27297 Brassica carinata HOM05D007324 ORTHO05D007884 6.9e-29 131.0 131 74.0
BolC8t47935H Brassica oleracea HOM05D007324 ORTHO05D007884 2.6e-28 129.0 114 65.8
BcaB04g17953 Brassica carinata HOM05D007324 ORTHO05D007884 3.2e-26 122.1 114 63.2
Sp1g28340 Schrenkiella parvula HOM05D007324 ORTHO05D007884 3.2e-26 122.1 135 69.6
A08p09020 Brassica napus HOM05D007324 ORTHO05D007884 2.1e-25 119.4 100 68.0
BraA08t32903Z Brassica rapa HOM05D007324 ORTHO05D007884 2.1e-25 119.4 100 68.0
Aa31LG2G13400 Aethionema arabicum HOM05D007324 ORTHO05D007884 1.0e-19 100.5 115 60.0
AL1G48030 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 5.1e-16 88.2 105 56.2
CARHR032010 Cardamine hirsuta HOM05D007324 ORTHO05D007884 7.4e-15 84.3 116 50.0
AL1G46810 Arabidopsis lyrata HOM05D007324 ORTHO05D007884 3.7e-14 82.0 115 48.7
Eucgr.E00290 Eucalyptus grandis HOM05D007324 ORTHO05D007884 1.8e-13 79.7 110 56.4
PGR042G1904 Punica granatum HOM05D007324 ORTHO05D007884 9.0e-13 77.4 95 57.9
Ah.07g200240 Amaranthus hybridus HOM05D007324 ORTHO05D007884 7.6e-12 74.3 103 55.3
Ciclev10033018m.g Citrus clementina HOM05D007324 ORTHO05D007884 7.6e-12 74.3 119 47.9
CSS0048146 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.0e-11 73.9 115 47.8
Glyma.05G112000 Glycine max HOM05D007324 ORTHO05D007884 1.7e-11 73.2 84 54.8
Actinidia14815 Actinidia chinensis HOM05D007324 ORTHO05D007884 2.2e-11 72.8 100 55.0
Glyma.17G155000 Glycine max HOM05D007324 ORTHO05D007884 8.4e-11 70.9 113 45.1
PSO478G0244 Papaver somniferum HOM05D007324 ORTHO05D007884 1.1e-10 70.5 90 55.6
CSS0008196 Camellia sinensis var. sinensis HOM05D007324 ORTHO05D007884 1.9e-10 69.7 115 46.1
Lj2A242T77 Lonicera japonica HOM05D007324 ORTHO05D007884 2.5e-10 69.3 114 50.0
arahy.Tifrunner.gnm1.ann1.0E68DR Arachis hypogaea HOM05D007324 ORTHO05D007884 5.5e-10 68.2 90 53.3
arahy.Tifrunner.gnm1.ann1.69TWVD Arachis hypogaea HOM05D007324 ORTHO05D007884 5.5e-10 68.2 90 53.3
Migut.E01386 Erythranthe guttata HOM05D007324 ORTHO05D007884 5.5e-10 68.2 99 49.5
PSO782G1330 Papaver somniferum HOM05D007324 ORTHO05D007884 7.2e-10 67.8 79 58.2
PSO782G2910 Papaver somniferum HOM05D007324 ORTHO05D007884 7.2e-10 67.8 90 54.4
Atru.chr6.1738 Acer truncatum HOM05D007324 ORTHO05D007884 9.3e-10 67.4 100 47.0
CARHR129450 Cardamine hirsuta HOM05D011082 ORTHO05D007884 9.3e-10 67.4 87 50.6
Medtr4g098480 Medicago truncatula HOM05D007324 ORTHO05D007884 2.1e-09 66.2 121 43.8
HanXRQChr02g0043531 Helianthus annuus HOM05D007324 ORTHO05D007884 2.7e-09 65.9 117 46.2
Aa31LG9G15320 Aethionema arabicum HOM05D011082 ORTHO05D007884 4.6e-09 65.1 89 49.4
Solyc06g061110.2 Solanum lycopersicum HOM05D007324 ORTHO05D007884 6.1e-09 64.7 100 46.0
Sopen06g021310 Solanum pennellii HOM05D007324 ORTHO05D007884 7.9e-09 64.3 100 46.0
Haze_08257 Corylus avellana HOM05D007324 ORTHO05D007884 1.3e-08 63.5 120 46.7
ECA240G0465 Erigeron canadensis HOM05D007324 ORTHO05D007884 1.3e-08 63.5 122 45.9
CiPaw.11G092000 Carya illinoinensis HOM05D007324 ORTHO05D007884 1.8e-08 63.2 112 49.1
Lsat_1_v5_gn_6_78560 Lactuca sativa HOM05D007324 ORTHO05D007884 2.3e-08 62.8 103 47.6
HanXRQChr03g0084061 Helianthus annuus HOM05D007324 ORTHO05D007884 3.0e-08 62.4 134 41.0
Oeu047787.1 Olea europaea HOM05D007324 ORTHO05D007884 3.0e-08 62.4 117 42.7
Thhalv10017485m.g Eutrema salsugineum HOM05D011082 ORTHO05D007884 3.9e-08 62.0 87 50.6
Lalb_Chr16g0386011 Lupinus albus HOM05D007324 ORTHO05D007884 3.9e-08 62.0 75 56.0
TWI81G0167 Tripterygium wilfordii HOM05D007324 ORTHO05D007884 3.9e-08 62.0 95 47.4
MD06G1032700 Malus domestica HOM05D007324 ORTHO05D007884 5.1e-08 61.6 114 43.0
FAN13G0501 Fragaria x ananassa HOM05D007324 ORTHO05D007884 6.7e-08 61.2 145 38.6
Gorai.004G186200 Gossypium raimondii HOM05D007324 ORTHO05D007884 8.7e-08 60.8 84 45.2
Phvul.003G230300 Phaseolus vulgaris HOM05D007324 ORTHO05D007884 8.7e-08 60.8 98 44.9
Gohir.A08G157700 Gossypium hirsutum HOM05D007324 ORTHO05D007884 1.9e-07 59.7 109 40.4
Gohir.D08G178000 Gossypium hirsutum HOM05D007324 ORTHO05D007884 3.3e-07 58.9 109 39.4
CDE12G0317 Ceratophyllum demersum HOM05D007324 ORTHO05D007884 4.3e-07 58.5 77 50.6
MELO3C032260.2 Cucumis melo HOM05D007324 ORTHO05D007884 4.3e-07 58.5 107 43.0
CsaV3_3G001850 Cucumis sativus L. HOM05D007324 ORTHO05D007884 7.4e-07 57.8 95 46.3
COL.COLO4_17062 Corchorus olitorius HOM05D007324 ORTHO05D007884 1.3e-06 57.0 102 45.1
SGA_v2.0_scaffold144G35830 Striga asiatica HOM05D007324 ORTHO05D007884 3.7e-06 55.5 97 41.2
Cpa.g.sc18.65 Carica papaya HOM05D007324 ORTHO05D007884 4.8e-06 55.1 85 50.6


User provided reference genes

Program Settings