Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p31580 Brassica napus HOM05D004133 ORTHO05D004683 1.0e-49 199.9 109 100.0
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 3.3e-37 158.3 108 83.3
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 4.4e-37 157.9 108 81.5
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 9.7e-37 156.8 108 82.4
BcaC03g13852 Brassica carinata HOM05D004133 ORTHO05D004683 1.3e-36 156.4 108 81.5
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 5.3e-35 151.0 108 77.8
BraA02t05633Z Brassica rapa HOM05D004133 ORTHO05D004683 2.9e-33 145.2 100 82.0
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 5.5e-32 141.0 108 73.1
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 1.0e-30 136.7 108 70.4
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 1.4e-30 136.3 108 73.1
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 1.4e-30 136.3 108 69.4
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 8.8e-30 133.7 108 69.4
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 2.0e-29 132.5 108 72.2
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 7.5e-29 130.6 105 69.5
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 7.5e-29 130.6 108 66.7
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 2.2e-28 129.0 108 69.4
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 2.8e-28 128.6 108 66.7
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 2.8e-28 128.6 108 66.7
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 3.7e-28 128.3 108 65.7
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 3.7e-28 128.3 108 65.7
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 6.3e-28 127.5 108 65.7
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 8.3e-28 127.1 108 65.7
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 8.3e-28 127.1 108 67.6
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 8.3e-28 127.1 108 67.6
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 1.1e-27 126.7 108 67.6
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 1.4e-27 126.3 108 65.7
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.8e-27 125.9 108 64.8
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 2.4e-27 125.6 108 63.9
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 2.4e-27 125.6 108 65.7
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 3.1e-27 125.2 108 63.0
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 5.4e-27 124.4 108 63.0
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 7.0e-27 124.0 108 63.0
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 9.1e-27 123.6 108 63.9
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.2e-26 123.2 108 63.9
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 1.6e-26 122.9 108 64.8
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 1.6e-26 122.9 108 62.0
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 1.6e-26 122.9 110 64.5
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 2.0e-26 122.5 108 68.5
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 2.0e-26 122.5 108 68.5
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 2.0e-26 122.5 108 68.5
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 2.7e-26 122.1 108 64.8
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 2.7e-26 122.1 108 63.9
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 2.7e-26 122.1 108 64.8
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 3.5e-26 121.7 108 63.9
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 4.5e-26 121.3 108 63.0
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 5.9e-26 120.9 108 63.0
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 5.9e-26 120.9 108 62.0
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 7.7e-26 120.6 108 63.0
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 2.9e-25 118.6 108 60.2
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.9e-25 118.6 108 63.9
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 2.9e-25 118.6 108 63.9
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 2.9e-25 118.6 108 63.0
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 5.0e-25 117.9 108 61.1
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 5.0e-25 117.9 108 60.2
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 6.5e-25 117.5 108 63.0
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 6.5e-25 117.5 108 62.0
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 8.6e-25 117.1 108 63.9
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 1.1e-24 116.7 108 65.7
Gohir.A05G077350 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.5e-24 116.3 108 62.0
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 4.2e-24 114.8 108 63.9
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 7.2e-24 114.0 108 60.2
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 1.6e-23 112.8 108 58.3
Gohir.D05G080150 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.6e-23 112.8 108 61.1
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 2.8e-23 112.1 108 59.3
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 3.6e-23 111.7 108 58.3
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 3.6e-23 111.7 108 58.3
COL.COLO4_25369 Corchorus olitorius HOM05D004133 ORTHO05D004683 4.7e-23 111.3 100 62.0
Oeu051476.1 Olea europaea HOM05D004133 ORTHO05D004683 1.0e-22 110.2 108 58.3
Actinidia22456 Actinidia chinensis HOM05D004133 ORTHO05D004683 4.0e-22 108.2 108 58.3
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 5.2e-22 107.8 108 57.4
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 1.3e-20 103.2 108 57.4
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 2.4e-19 99.0 108 54.6
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 5.4e-19 97.8 108 58.3
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 5.4e-19 97.8 108 55.6
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 5.4e-19 97.8 108 50.0
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 7.0e-19 97.4 108 56.5
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 1.2e-18 96.7 107 52.3
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 2.7e-18 95.5 108 53.7
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 5.9e-18 94.4 108 52.8
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 7.8e-18 94.0 108 52.8
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 7.8e-18 94.0 108 52.8
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 1.3e-17 93.2 108 52.8
Gorai.009G081800 Gossypium raimondii HOM05D004133 ORTHO05D004683 1.3e-17 93.2 88 62.5
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 2.3e-17 92.4 108 55.6
Peaxi162Scf00259g00026 Petunia axillaris HOM05D004133 ORTHO05D004683 2.9e-17 92.0 93 60.2
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 5.0e-17 91.3 108 54.6
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 5.0e-17 91.3 101 54.5
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 1.1e-16 90.1 108 53.7
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 1.5e-16 89.7 108 54.6
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 1.9e-16 89.4 82 61.0
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 2.5e-16 89.0 81 61.7
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 3.3e-16 88.6 108 50.9
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 3.3e-16 88.6 108 51.9
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 3.3e-16 88.6 104 51.0
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 2.8e-15 85.5 108 48.1
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.8e-15 85.5 108 50.9
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 3.6e-15 85.1 108 47.2
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 3.6e-15 85.1 108 50.9
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 4.7e-15 84.7 108 50.9
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 4.7e-15 84.7 108 50.9
Dinv18868 Davidia involucrata HOM05D004133 ORTHO05D004683 6.1e-15 84.3 82 56.1
Sed0022805 Sechium edule HOM05D004133 ORTHO05D004683 1.4e-14 83.2 84 59.5
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 1.8e-14 82.8 108 50.0
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 2.3e-14 82.4 108 50.0
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 2.3e-14 82.4 108 45.4
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 3.0e-14 82.0 108 47.2
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 6.8e-14 80.9 108 48.1
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 6.8e-14 80.9 108 48.1
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 6.8e-14 80.9 106 46.2
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 8.9e-14 80.5 106 42.5
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 8.9e-14 80.5 108 49.1
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 3.4e-13 78.6 108 49.1
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 3.4e-13 78.6 108 48.1
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 4.4e-13 78.2 79 54.4
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 5.8e-13 77.8 72 61.1
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 5.8e-13 77.8 108 48.1
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 9.8e-13 77.0 67 64.2
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 1.7e-12 76.3 108 47.2
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 2.9e-12 75.5 105 46.7
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 2.9e-12 75.5 105 46.7
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 2.9e-12 75.5 108 47.2
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 2.9e-12 75.5 108 45.4
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 2.9e-12 75.5 108 45.4
vmacro14308 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 3.7e-12 75.1 109 43.1
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 4.9e-12 74.7 108 47.2
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 4.9e-12 74.7 108 47.2
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 7.0e-11 70.9 56 64.3
Nitab4.5_0006895g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.6e-10 69.7 70 61.4
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 3.5e-10 68.6 108 42.6
Nitab4.5_0002426g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.0e-09 65.5 53 66.0
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 3.9e-09 65.1 56 60.7
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 1.1e-08 63.5 57 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 1.5e-08 63.2 108 38.9
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 5.6e-08 61.2 110 40.9
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 3.6e-07 58.5 57 63.2
BcaB04g17122 Brassica carinata HOM05D004133 ORTHO05D004683 6.8e-06 54.3 74 50.0


User provided reference genes

Program Settings