Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p31290 Brassica napus HOM05D003603 ORTHO05D004186 4.5e-65 251.1 128 100.0
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 1.1e-34 150.2 119 72.3
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 1.1e-34 150.2 119 72.3
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 9.1e-34 147.1 118 71.2
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 9.1e-34 147.1 118 71.2
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 3.8e-32 141.7 135 63.0
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 3.8e-32 141.7 135 63.0
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 5.0e-32 141.4 134 64.2
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 5.0e-32 141.4 134 64.2
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 5.0e-32 141.4 134 64.2
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 8.5e-32 140.6 137 62.0
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 1.4e-31 139.8 134 63.4
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 1.4e-31 139.8 134 63.4
BcaB07g32857 Brassica carinata HOM05D003603 ORTHO05D004186 7.2e-31 137.5 122 66.4
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 9.4e-31 137.1 137 61.3
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 2.3e-29 132.5 137 59.1
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 7.4e-28 127.5 134 61.2
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 4.1e-26 121.7 134 58.2
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 3.6e-22 108.6 132 53.0
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 5.2e-21 104.8 141 48.9
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 6.7e-21 104.4 124 50.8
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 2.6e-20 102.4 126 50.0
THA.LOC104814407 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 9.7e-20 100.5 140 47.9
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.7e-19 99.8 125 48.8
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 3.7e-19 98.6 125 48.0
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 6.3e-19 97.8 125 48.0
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 6.3e-19 97.8 125 49.6
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 1.1e-18 97.1 144 45.1
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 3.1e-18 95.5 124 46.0
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 5.3e-18 94.7 125 47.2
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.3e-18 94.7 125 47.2
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.3e-18 94.7 125 47.2
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 5.3e-18 94.7 127 46.5
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 9.1e-18 94.0 125 47.2
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.6e-17 93.2 73 68.5
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 2.0e-17 92.8 126 46.8
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 4.5e-17 91.7 127 44.9
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 5.9e-17 91.3 128 43.8
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 7.7e-17 90.9 126 45.2
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 1.0e-16 90.5 69 71.0
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 1.3e-16 90.1 67 67.2
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 1.3e-16 90.1 124 46.8
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 1.7e-16 89.7 131 47.3
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 2.2e-16 89.4 127 49.6
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 2.9e-16 89.0 125 44.8
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 2.9e-16 89.0 125 44.8
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 2.9e-16 89.0 125 45.6
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 2.9e-16 89.0 126 44.4
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 3.8e-16 88.6 126 43.7
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 6.5e-16 87.8 126 44.4
CSS0006858 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 8.5e-16 87.4 130 43.1
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 8.5e-16 87.4 128 47.7
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 1.5e-15 86.7 125 44.0
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 1.5e-15 86.7 125 44.0
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 3.2e-15 85.5 125 43.2
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 4.2e-15 85.1 128 43.0
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 4.2e-15 85.1 134 41.8
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 5.5e-15 84.7 70 65.7
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 9.4e-15 84.0 126 41.3
TWI15G1018 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 9.4e-15 84.0 127 45.7
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 1.2e-14 83.6 132 43.2
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 1.2e-14 83.6 132 43.2
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.2e-14 83.6 127 46.5
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 1.6e-14 83.2 75 57.3
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.6e-14 83.2 130 41.5
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 1.6e-14 83.2 125 45.6
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 2.1e-14 82.8 128 41.4
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 2.1e-14 82.8 125 43.2
TWI81G0448 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 2.1e-14 82.8 125 46.4
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 2.7e-14 82.4 126 46.0
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 3.6e-14 82.0 68 64.7
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 3.6e-14 82.0 72 61.1
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 4.7e-14 81.6 68 64.7
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 4.7e-14 81.6 68 64.7
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 6.1e-14 81.3 130 44.6
BcaC02g11674 Brassica carinata HOM05D003603 ORTHO05D004186 8.0e-14 80.9 147 40.1
QL12p000179 Quercus lobata HOM05D003603 ORTHO05D004186 8.0e-14 80.9 65 64.6
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 1.0e-13 80.5 127 40.9
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.8e-13 79.7 127 41.7
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 1.8e-13 79.7 138 41.3
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 3.0e-13 79.0 130 43.1
C04p12530 Brassica napus HOM05D003603 ORTHO05D004186 4.0e-13 78.6 73 58.9
Actinidia29278 Actinidia chinensis HOM05D003603 ORTHO05D004186 5.2e-13 78.2 66 59.1
BcaC02g11672 Brassica carinata HOM05D003603 ORTHO05D004186 5.2e-13 78.2 147 39.5
SGA_v2.0_scaffold96G29046 Striga asiatica HOM05D003603 ORTHO05D004186 5.2e-13 78.2 145 37.2
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 5.2e-13 78.2 125 41.6
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 8.8e-13 77.4 124 41.1
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 1.2e-12 77.0 87 52.9
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 1.2e-12 77.0 87 52.9
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 1.2e-12 77.0 125 42.4
Aqoxy3G02143 Aquilegia oxysepala HOM05D003603 ORTHO05D004186 1.5e-12 76.6 123 41.5
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 2.0e-12 76.3 146 37.0
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 2.0e-12 76.3 66 62.1
C04p12550 Brassica napus HOM05D003603 ORTHO05D004186 2.6e-12 75.9 73 57.5
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 3.4e-12 75.5 70 57.1
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 3.4e-12 75.5 140 39.3
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 4.4e-12 75.1 130 40.8
MSTRG.25700 Avicennia marina HOM05D003603 ORTHO05D004186 7.5e-12 74.3 148 33.8
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 7.5e-12 74.3 86 52.3
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 7.5e-12 74.3 86 52.3
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 7.5e-12 74.3 86 52.3
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 7.5e-12 74.3 123 43.9
SalBow1G3570 Salvia bowleyana HOM05D003603 ORTHO05D004186 1.7e-11 73.2 69 56.5
SalBow1G4269 Salvia bowleyana HOM05D003603 ORTHO05D004186 1.7e-11 73.2 69 56.5
Ah.07g201360 Amaranthus hybridus HOM05D003603 ORTHO05D004186 3.7e-11 72.0 70 54.3
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 3.7e-11 72.0 122 41.8
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.3e-11 71.2 70 55.7
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.3e-11 71.2 71 56.3
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 6.3e-11 71.2 69 56.5
Hund14334 Selenicereus undatus HOM05D003603 ORTHO05D004186 8.3e-11 70.9 140 39.3
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 1.8e-10 69.7 129 38.8
HanXRQChr03g0082031 Helianthus annuus HOM05D003603 ORTHO05D004186 3.1e-10 68.9 66 54.5
Nitab4.5_0005370g0020 Nicotiana tabacum HOM05D003603 ORTHO05D004186 3.1e-10 68.9 124 37.1
vmacro00238 Vaccinium macrocarpon HOM05D003603 ORTHO05D004186 3.1e-10 68.9 69 59.4
Solyc08g076180.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 5.4e-10 68.2 64 53.1
PGSC0003DMG400009296 Solanum tuberosum HOM05D003603 ORTHO05D004186 5.4e-10 68.2 64 53.1
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 5.4e-10 68.2 67 53.7
Zm00001eb251500 Zea mays HOM05D003603 ORTHO05D004186 5.4e-10 68.2 68 51.5
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 7.0e-10 67.8 66 54.5
Rhsim11G0028200 Rhododendron simsii HOM05D003603 ORTHO05D004186 7.0e-10 67.8 124 40.3
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 9.1e-10 67.4 65 56.9
Lj8A318T46 Lonicera japonica HOM05D003603 ORTHO05D004186 9.1e-10 67.4 70 60.0
Rhsim07G0134300 Rhododendron simsii HOM05D003603 ORTHO05D004186 9.1e-10 67.4 71 54.9
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 9.1e-10 67.4 148 36.5
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 1.2e-09 67.0 94 41.5
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 1.2e-09 67.0 126 40.5
DCAR_008204 Daucus carota HOM05D003603 ORTHO05D004186 1.2e-09 67.0 77 46.8
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 1.2e-09 67.0 79 49.4
Migut.A00590 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.2e-09 67.0 145 37.2
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 1.2e-09 67.0 126 36.5
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 1.2e-09 67.0 122 39.3
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 1.2e-09 67.0 71 52.1
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 1.2e-09 67.0 71 52.1
Nitab4.5_0001632g0070 Nicotiana tabacum HOM05D003603 ORTHO05D004186 1.6e-09 66.6 125 36.8
Peaxi162Scf00052g00329 Petunia axillaris HOM05D003603 ORTHO05D004186 1.6e-09 66.6 124 37.1
Sopen08g024820 Solanum pennellii HOM05D003603 ORTHO05D004186 1.6e-09 66.6 64 51.6
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.7e-09 65.9 65 55.4
Os02g0697700 Oryza sativa ssp. japonica HOM05D003603 ORTHO05D004186 7.7e-09 64.3 73 45.2
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 1.0e-08 63.9 122 40.2
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.7e-08 63.2 69 49.3
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 1.7e-08 63.2 123 37.4
Nitab4.5_0002429g0050 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.2e-08 62.8 126 35.7
CAN.G474.26 Capsicum annuum HOM05D003603 ORTHO05D004186 2.9e-08 62.4 125 34.4
Lsat_1_v5_gn_6_17681 Lactuca sativa HOM05D003603 ORTHO05D004186 2.9e-08 62.4 138 37.0
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 3.8e-08 62.0 73 47.9
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 3.8e-08 62.0 127 38.6
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 5.0e-08 61.6 66 51.5
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 5.0e-08 61.6 66 51.5
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.1e-07 60.5 68 47.1
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 1.1e-07 60.5 126 35.7
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.5e-07 60.1 152 32.9
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 5.5e-07 58.2 67 44.8
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 5.5e-07 58.2 67 44.8
Peaxi162Scf00185g01122 Petunia axillaris HOM05D003603 ORTHO05D004186 7.2e-07 57.8 122 34.4
Oeu027879.1 Olea europaea HOM05D003603 ORTHO05D004186 1.6e-06 56.6 64 53.1
HPP92_014701 Vanilla planifolia HOM05D003603 ORTHO05D004186 1.6e-06 56.6 69 46.4


User provided reference genes

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