Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 8.2e-191 670.2 341 100.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.9e-118 429.9 292 79.8
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.5e-115 420.2 289 78.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.5e-115 420.2 289 78.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 3.3e-115 419.1 284 79.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-106 390.6 284 75.0
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.8e-106 388.7 284 72.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 6.4e-103 378.3 283 71.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.1e-102 377.5 284 71.1
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 7.1e-102 374.8 284 70.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 7.1e-102 374.8 284 71.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 7.1e-102 374.8 284 71.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 7.1e-102 374.8 284 71.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.1e-101 373.2 284 70.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.7e-101 372.9 284 70.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.3e-100 370.5 284 70.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 9.6e-99 364.4 285 70.2
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 9.6e-99 364.4 287 70.4
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 4.3e-91 339.0 283 65.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 6.9e-81 305.1 170 88.8
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.1e-73 279.6 255 59.6
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.9e-72 275.4 268 56.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 5.9e-72 275.4 268 56.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.7e-71 273.9 256 55.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 6.5e-71 271.9 281 55.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 6.5e-71 271.9 285 51.9
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 8.5e-71 271.6 281 54.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 8.5e-71 271.6 268 58.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.1e-70 271.2 254 57.9
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.9e-70 270.4 260 57.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 5.5e-70 268.9 253 58.1
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 5.5e-70 268.9 253 58.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.7e-69 265.8 247 57.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 7.9e-69 265.0 275 54.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.4e-68 264.2 242 59.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.8e-68 263.8 229 61.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.0e-68 263.1 307 49.8
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.2e-68 262.3 229 59.8
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.2e-68 262.3 257 56.0
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 6.7e-68 261.9 256 57.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 6.7e-68 261.9 257 56.4
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 8.8e-68 261.5 167 77.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.1e-67 261.2 233 60.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-67 260.8 256 57.0
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.5e-67 260.8 167 76.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.6e-67 260.0 167 75.4
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 4.4e-67 259.2 283 51.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.4e-67 258.5 255 55.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.4e-67 258.5 281 52.7
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.3e-66 257.7 258 55.4
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.7e-66 257.3 275 53.5
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.2e-66 256.9 230 59.6
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-66 256.5 281 52.0
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 2.8e-66 256.5 248 56.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.8e-66 255.8 271 52.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.8e-66 255.8 304 50.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.8e-66 255.8 275 53.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.3e-66 255.4 289 50.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.3e-66 255.4 167 74.9
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.2e-66 255.0 271 51.3
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 8.2e-66 255.0 167 74.9
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.1e-65 254.6 167 74.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.8e-65 253.8 232 58.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 5.3e-65 252.3 258 55.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 5.3e-65 252.3 167 73.7
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 5.3e-65 252.3 170 72.9
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 7.0e-65 251.9 167 76.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 7.0e-65 251.9 167 75.4
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 9.1e-65 251.5 231 59.3
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.2e-64 251.1 168 74.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.6e-64 250.8 287 48.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.6e-64 250.8 167 74.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-64 250.8 167 72.5
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.6e-64 250.0 250 54.4
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.6e-64 250.0 167 74.3
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.5e-64 249.6 167 71.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.5e-64 249.2 228 57.0
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.3e-63 247.7 167 71.9
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.3e-63 247.7 167 73.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.7e-63 247.3 167 73.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.2e-63 246.9 267 52.8
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 2.9e-63 246.5 169 73.4
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.9e-63 246.5 167 73.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.8e-63 246.1 167 73.7
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 5.0e-63 245.7 167 74.3
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.0e-63 245.7 167 73.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 8.5e-63 245.0 245 53.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 8.5e-63 245.0 167 71.3
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.1e-62 244.6 167 70.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.5e-62 243.4 167 71.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.2e-62 242.7 167 70.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.2e-62 242.7 167 71.3
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.2e-62 242.7 167 71.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 9.4e-62 241.5 167 71.9
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-61 241.1 167 71.3
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.2e-61 241.1 167 70.1
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.6e-61 239.6 168 72.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 6.1e-61 238.8 169 69.2
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.0e-60 236.5 197 62.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 4.0e-60 236.1 167 71.3
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.0e-60 236.1 200 60.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.2e-60 235.7 167 70.1
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.8e-60 235.0 256 53.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.6e-59 233.4 144 77.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.4e-59 232.6 167 68.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.7e-59 231.5 167 69.5
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.8e-58 229.9 265 50.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 4.8e-58 229.2 243 51.0
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.1e-57 228.0 168 67.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.8e-57 227.3 267 49.1
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.8e-57 227.3 168 69.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 3.1e-57 226.5 169 67.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.3e-57 225.7 167 66.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.2e-56 224.6 167 68.3
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.7e-56 223.4 292 47.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.7e-55 220.7 235 51.1
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.1e-54 218.0 167 68.3
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.5e-54 217.6 159 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.2e-54 216.1 168 66.1
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.2e-54 215.3 169 65.7
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-53 214.5 250 50.4
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.7e-53 212.6 178 61.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.7e-51 205.7 166 65.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.8e-50 203.4 215 52.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 8.3e-50 201.8 146 67.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.4e-49 201.1 167 64.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 4.5e-48 196.1 239 48.5
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.0e-47 194.9 177 58.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 8.0e-45 185.3 168 58.9
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 4.0e-44 183.0 175 56.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.7e-43 179.1 116 72.4
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 9.8e-43 178.3 179 55.3
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 9.8e-43 178.3 167 57.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-41 174.9 131 67.2
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.4e-41 172.6 185 49.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.0e-40 170.6 131 67.2
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.3e-38 162.2 131 64.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.1e-33 146.4 105 70.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 2.0e-32 144.1 114 63.2
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.8e-32 142.1 115 67.0
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.1e-28 130.2 248 35.9
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 6.8e-28 129.0 160 45.0
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.6e-24 117.9 75 72.0
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-19 101.3 70 70.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.2e-18 97.4 64 73.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.9e-18 96.3 90 57.8
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.6e-16 91.3 51 78.4
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 7.8e-16 89.0 63 71.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-15 88.6 66 68.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.7e-15 87.8 64 68.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 9.5e-14 82.0 89 48.3
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.5e-14 82.0 120 40.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.4e-12 78.2 64 64.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 4.4e-11 73.2 46 78.3
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.6e-11 72.4 148 31.8
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 4.9e-10 69.7 37 81.1
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 4.9e-10 69.7 37 81.1
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.4e-09 67.4 64 54.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.1e-08 64.3 61 55.7


User provided reference genes

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