Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p30990 Brassica napus HOM05D001176 ORTHO05D020200 1.4e-37 159.1 79 100.0
A09p34560 Brassica napus HOM05D001176 ORTHO05D020200 3.9e-27 124.4 72 86.1
BolC5t31822H Brassica oleracea HOM05D001176 ORTHO05D020200 6.9e-24 113.6 57 94.7
BcaB04g18125 Brassica carinata HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
BcaC07g37726 Brassica carinata HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
A08p10400 Brassica napus HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
BolC8t48109H Brassica oleracea HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
Thhalv10007138m.g Eutrema salsugineum HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
Sp1g27490 Schrenkiella parvula HOM05D001176 ORTHO05D003317 1.1e-16 89.7 55 80.0
Carub.0001s3010 Capsella rubella HOM05D001176 ORTHO05D003317 2.4e-16 88.6 55 78.2
AL1G45870 Arabidopsis lyrata HOM05D001176 ORTHO05D003317 4.0e-16 87.8 55 78.2
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 5.3e-16 87.4 55 78.2
AT1G31800 Arabidopsis thaliana HOM05D001176 ORTHO05D003317 5.3e-16 87.4 55 78.2
CARHR031100 Cardamine hirsuta HOM05D001176 ORTHO05D003317 9.0e-16 86.7 55 78.2
SGA_v2.0_scaffold13G06352 Striga asiatica HOM05D001176 ORTHO05D003317 2.2e-14 82.0 55 69.1
CSS0037928 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D003317 3.8e-14 81.3 55 69.1
Eucgr.H01373 Eucalyptus grandis HOM05D001176 ORTHO05D003317 4.9e-14 80.9 55 69.1
TWI59G0800 Tripterygium wilfordii HOM05D001176 ORTHO05D003317 4.9e-14 80.9 55 70.9
GSVIVG01019158001 Vitis vinifera HOM05D001176 ORTHO05D003317 4.9e-14 80.9 52 73.1
Atru.chr12.2158 Acer truncatum HOM05D001176 ORTHO05D003317 6.4e-14 80.5 57 66.7
Migut.F02071 Erythranthe guttata HOM05D001176 ORTHO05D003317 6.4e-14 80.5 55 69.1
Thecc.05G203300 Theobroma cacao HOM05D001176 ORTHO05D003317 6.4e-14 80.5 55 69.1
FAN05G5118 Fragaria x ananassa HOM05D001176 ORTHO05D003317 8.4e-14 80.1 55 67.3
FAN09G3806 Fragaria x ananassa HOM05D001176 ORTHO05D003317 8.4e-14 80.1 55 67.3
RcHm_v2.0_Chr3g0448381 Rosa chinensis HOM05D001176 ORTHO05D003317 8.4e-14 80.1 55 67.3
Rhsim05G0168700 Rhododendron simsii HOM05D001176 ORTHO05D003317 1.1e-13 79.7 55 65.5
THA.LOC104814399 Tarenaya hassleriana HOM05D001176 ORTHO05D003317 1.1e-13 79.7 52 73.1
Aqoxy2G03809 Aquilegia oxysepala HOM05D001176 ORTHO05D003317 1.4e-13 79.3 55 67.3
Lsat_1_v5_gn_2_16321 Lactuca sativa HOM05D001176 ORTHO05D003317 1.4e-13 79.3 55 67.3
Nitab4.5_0000456g0030 Nicotiana tabacum HOM05D001176 ORTHO05D003317 1.4e-13 79.3 55 67.3
Psat3g105040 Pisum sativum HOM05D001176 ORTHO05D003317 1.4e-13 79.3 55 67.3
CAN.G4.31 Capsicum annuum HOM05D001176 ORTHO05D003317 1.9e-13 79.0 55 65.5
Medtr7g079440 Medicago truncatula HOM05D001176 ORTHO05D003317 1.9e-13 79.0 55 69.1
Nitab4.5_0009814g0010 Nicotiana tabacum HOM05D001176 ORTHO05D003317 1.9e-13 79.0 55 65.5
Os02g0817900 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D003317 1.9e-13 79.0 55 67.3
TPR.G29411 Trifolium pratense HOM05D001176 ORTHO05D003317 1.9e-13 79.0 55 67.3
Duzib106G0985 Durio zibethinus HOM05D001176 ORTHO05D003317 2.4e-13 78.6 55 67.3
FAN14G4358 Fragaria x ananassa HOM05D001176 ORTHO05D003317 2.4e-13 78.6 55 65.5
Manes.09G183600 Manihot esculenta HOM05D001176 ORTHO05D003317 2.4e-13 78.6 55 67.3
Potri.013G088100 Populus trichocarpa HOM05D001176 ORTHO05D003317 2.4e-13 78.6 52 71.2
Actinidia03827 Actinidia chinensis HOM05D001176 ORTHO05D003317 3.2e-13 78.2 54 68.5
MSTRG.9229 Avicennia marina HOM05D001176 ORTHO05D003317 3.2e-13 78.2 55 69.1
Gohir.D13G159400 Gossypium hirsutum HOM05D001176 ORTHO05D003317 3.2e-13 78.2 55 69.1
Lj2C52G4 Lonicera japonica HOM05D001176 ORTHO05D003317 3.2e-13 78.2 52 71.2
ECA238G4204 Erigeron canadensis HOM05D001176 ORTHO05D003317 4.2e-13 77.8 55 65.5
Gohir.A13G154700 Gossypium hirsutum HOM05D001176 ORTHO05D003317 4.2e-13 77.8 55 67.3
Gorai.013G180200 Gossypium raimondii HOM05D001176 ORTHO05D003317 4.2e-13 77.8 55 67.3
HanXRQChr17g0559051 Helianthus annuus HOM05D001176 ORTHO05D003317 4.2e-13 77.8 55 65.5
TAR362G0187 Trochodendron aralioides HOM05D001176 ORTHO05D003317 4.2e-13 77.8 55 67.3
Peaxi162Scf00215g00510 Petunia axillaris HOM05D001176 ORTHO05D003317 5.4e-13 77.4 55 63.6
AUR62000370 Chenopodium quinoa HOM05D001176 ORTHO05D003317 7.1e-13 77.0 55 63.6
Glyma.18G239900 Glycine max HOM05D001176 ORTHO05D003317 7.1e-13 77.0 55 65.5
MD04G1239800 Malus domestica HOM05D001176 ORTHO05D003317 7.1e-13 77.0 55 65.5
Hund21873 Selenicereus undatus HOM05D001176 ORTHO05D003317 7.1e-13 77.0 55 65.5
arahy.Tifrunner.gnm1.ann1.570P5C Arachis hypogaea HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 63.6
arahy.Tifrunner.gnm1.ann1.F8T0MB Arachis hypogaea HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 63.6
Cc09_g03290 Coffea canephora HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 63.6
FvH4_6g00890 Fragaria vesca HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 65.5
MD12G1257000 Malus domestica HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 65.5
Nn3g19881 Nelumbo nucifera HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 65.5
PGR031G1111 Punica granatum HOM05D001176 ORTHO05D003317 9.3e-13 76.6 52 69.2
Solyc04g051190.3 Solanum lycopersicum HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 63.6
Sopen04g022560 Solanum pennellii HOM05D001176 ORTHO05D003317 9.3e-13 76.6 55 63.6
BraA08t33039Z Brassica rapa HOM05D001176 ORTHO05D003317 1.2e-12 76.3 47 78.7
CiPaw.07G075100 Carya illinoinensis HOM05D001176 ORTHO05D003317 1.2e-12 76.3 55 65.5
DCAR_023843 Daucus carota HOM05D001176 ORTHO05D003317 1.2e-12 76.3 55 65.5
Duzib128G0007 Durio zibethinus HOM05D001176 ORTHO05D003317 1.2e-12 76.3 55 65.5
Glyma.09G252800 Glycine max HOM05D001176 ORTHO05D003317 1.2e-12 76.3 55 65.5
QL01p050622 Quercus lobata HOM05D001176 ORTHO05D003317 1.2e-12 76.3 55 65.5
Sabra13G0069700 Salix brachista HOM05D001176 ORTHO05D003317 1.2e-12 76.3 52 67.3
Ciclev10011312m.g Citrus clementina HOM05D001176 ORTHO05D003317 1.6e-12 75.9 55 61.8
Lj1g0018224 Lotus japonicus HOM05D001176 ORTHO05D003317 1.6e-12 75.9 55 67.3
Lalb_Chr03g0038311 Lupinus albus HOM05D001176 ORTHO05D003317 1.6e-12 75.9 55 63.6
Nn1g03127 Nelumbo nucifera HOM05D001176 ORTHO05D003317 1.6e-12 75.9 55 65.5
CANSAT11G0194 Cannabis sativa HOM05D001176 ORTHO05D003317 2.1e-12 75.5 55 63.6
Prupe.6G358000 Prunus persica HOM05D001176 ORTHO05D003317 2.1e-12 75.5 55 63.6
Zm00001eb258960 Zea mays HOM05D001176 ORTHO05D003317 2.1e-12 75.5 52 67.3
Cfa006301 Carpinus fangiana HOM05D001176 ORTHO05D003317 2.7e-12 75.1 55 63.6
SalBow1G1247 Salvia bowleyana HOM05D001176 ORTHO05D003317 3.5e-12 74.7 55 65.5
ClCG10G008080 Citrullus lanatus HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 63.6
MELO3C014945.2 Cucumis melo HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 63.6
CsaV3_3G007050 Cucumis sativus L. HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 63.6
MBI10_g09189_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D003317 4.6e-12 74.3 52 67.3
Sed0016129 Sechium edule HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 63.6
Sed0016380 Sechium edule HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 61.8
Sed0023390 Sechium edule HOM05D001176 ORTHO05D003317 4.6e-12 74.3 55 61.8
Oeu054597.1 Olea europaea HOM05D001176 ORTHO05D003317 6.0e-12 73.9 55 63.6
Phvul.008G056400 Phaseolus vulgaris HOM05D001176 ORTHO05D003317 6.0e-12 73.9 55 61.8
Haze_04497 Corylus avellana HOM05D001176 ORTHO05D003317 7.9e-12 73.6 55 61.8
VMungo1383G3642 Vigna mungo HOM05D001176 ORTHO05D003317 7.9e-12 73.6 52 65.4
PSO017G2236 Papaver somniferum HOM05D001176 ORTHO05D003317 1.0e-11 73.2 55 61.8
PSO063G1081 Papaver somniferum HOM05D001176 ORTHO05D003317 1.0e-11 73.2 55 61.8
Sc09g0001650 Simmondsia chinensis HOM05D001176 ORTHO05D003317 1.0e-11 73.2 55 60.0
CDE02G2271 Ceratophyllum demersum HOM05D001176 ORTHO05D003317 1.8e-11 72.4 55 61.8
Pp3c5_28020 Physcomitrium patens HOM05D001176 ORTHO05D003317 1.5e-10 69.3 51 60.8
ATR0088G045 Amborella trichopoda HOM05D001176 ORTHO05D003317 1.9e-10 68.9 52 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2586 Anthoceros agrestis HOM05D001176 ORTHO05D003317 2.5e-10 68.6 51 56.9
EL10Ac4g09433 Beta vulgaris HOM05D001176 ORTHO05D003317 3.3e-10 68.2 55 58.2
SMO351G0009 Selaginella moellendorffii HOM05D001176 ORTHO05D003317 5.6e-10 67.4 52 57.7
SEGI_13377 Sequoiadendron giganteum HOM05D001176 ORTHO05D003317 9.6e-10 66.6 55 56.4
RhsimUnG0090400 Rhododendron simsii HOM05D001176 ORTHO05D020200 1.3e-09 66.2 47 61.7
AUR62006725 Chenopodium quinoa HOM05D001176 ORTHO05D003317 2.1e-09 65.5 47 61.7
Mapoly0011s0135 Marchantia polymorpha HOM05D001176 ORTHO05D003317 6.2e-09 63.9 54 53.7
vmacro19610 Vaccinium macrocarpon HOM05D001176 ORTHO05D003317 5.3e-08 60.8 48 58.3
Cre02.g142266 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D003317 6.4e-06 53.9 59 49.2


User provided reference genes

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