Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1316.6 682 100.0
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 0.0e+00 1310.8 682 98.4
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1310.0 682 98.4
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 0.0e+00 1310.0 682 98.4
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 0.0e+00 1309.7 682 98.2
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 0.0e+00 1283.9 682 96.5
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 0.0e+00 1258.0 682 94.6
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 0.0e+00 1246.1 682 93.3
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 0.0e+00 1239.6 682 93.0
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 0.0e+00 1234.2 682 92.4
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 0.0e+00 1231.5 683 92.5
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 0.0e+00 1224.2 682 91.8
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 0.0e+00 1187.6 682 89.1
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 0.0e+00 1143.3 685 84.4
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 691 75.4
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 3.0e-293 1011.5 692 74.9
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 1.5e-292 1009.2 691 75.3
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 2.5e-292 1008.4 691 75.0
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 7.4e-292 1006.9 694 74.1
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.2e-291 1005.4 694 74.1
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 2.8e-291 1005.0 695 74.2
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 4.8e-291 1004.2 697 74.7
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 4.5e-289 997.7 691 74.0
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 1.1e-287 993.0 691 74.1
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.4e-287 992.6 698 73.4
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 1.4e-287 992.6 691 73.2
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 3.2e-287 991.5 696 73.9
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 4.2e-287 991.1 695 73.7
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 1.6e-286 989.2 689 74.3
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 2.3e-285 985.3 691 73.2
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 8.8e-285 983.4 687 73.5
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 4.3e-284 981.1 687 73.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 5.7e-284 980.7 695 73.2
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 5.7e-284 980.7 735 70.7
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 7.4e-284 980.3 731 70.9
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 9.7e-284 979.9 696 72.4
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 9.7e-284 979.9 692 73.1
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 2.8e-283 978.4 698 72.6
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 4.8e-283 977.6 692 72.3
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 1.1e-282 976.5 689 72.1
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 1.1e-282 976.5 690 73.3
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 1.8e-282 975.7 695 72.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 6.9e-282 973.8 684 72.8
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 2.0e-281 972.2 697 72.5
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 2.6e-281 971.8 697 72.2
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 2.6e-281 971.8 692 71.5
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 3.4e-281 971.5 697 72.3
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 3.4e-281 971.5 685 73.7
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 4.5e-281 971.1 692 72.0
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.3e-280 969.5 694 71.8
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.7e-280 969.1 690 72.8
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 1.7e-280 969.1 694 72.0
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 3.8e-280 968.0 698 71.5
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 3.8e-280 968.0 695 72.9
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 1.9e-279 965.7 692 71.7
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 1.9e-279 965.7 692 71.7
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 3.2e-279 964.9 692 71.2
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 3.2e-279 964.9 696 71.1
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 4.2e-279 964.5 691 71.5
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 9.4e-279 963.4 697 71.2
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 2.1e-278 962.2 694 71.9
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.9e-278 960.3 684 72.7
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 2.3e-277 958.7 694 70.5
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 3.9e-277 958.0 690 72.2
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 6.7e-277 957.2 684 72.4
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 6.7e-277 957.2 704 70.5
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 3.3e-276 954.9 692 72.1
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 6.3e-275 950.7 694 70.2
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 2.4e-274 948.7 680 72.2
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.1e-274 948.3 689 71.6
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 7.7e-273 943.7 741 67.3
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 5.5e-271 937.6 694 70.0
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.6e-270 936.0 694 69.6
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 2.3e-269 932.2 722 66.6
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 2.6e-268 928.7 798 62.9
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 3.3e-268 928.3 693 69.7
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.8e-266 922.5 692 69.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.0e-264 916.8 696 68.7
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.1e-263 913.3 648 72.5
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 3.2e-263 911.8 693 67.8
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.6e-262 909.4 693 68.3
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 4.7e-262 907.9 691 69.2
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 8.0e-262 907.1 694 67.3
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.5e-249 865.1 680 66.8
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 7.5e-244 847.4 702 63.8
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.1e-237 825.5 689 63.3
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.9e-234 816.2 554 76.9
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.3e-232 809.3 1199 43.3
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.1e-229 800.4 717 59.3
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.9e-223 779.6 569 70.3
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 3.3e-223 778.9 768 58.3
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.6e-220 769.2 720 56.2
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.9e-215 753.1 534 73.4
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 2.4e-205 719.5 468 77.6
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 1.4e-202 710.3 510 71.0
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 7.3e-199 698.0 696 55.0
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 4.0e-197 692.2 641 55.9
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.3e-192 677.2 514 67.9
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.3e-179 634.0 419 76.4
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 3.7e-142 509.6 705 42.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 3.5e-132 476.5 699 41.1
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 3.5e-132 476.5 705 40.7
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 4.1e-117 426.4 685 41.6
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 3.3e-114 416.8 270 77.4
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 4.3e-114 416.4 473 49.0
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.4e-101 374.8 686 38.8
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 6.0e-100 369.4 275 73.5
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 5.2e-96 356.3 421 50.6
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.6e-95 352.4 232 77.2
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.9e-88 329.3 653 37.5
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 6.6e-83 312.8 676 34.0
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 2.3e-75 287.7 244 63.1
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 4.9e-70 270.0 293 54.3
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.2e-65 252.7 218 61.5
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 1.0e-59 235.7 201 64.2
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 8.7e-59 232.6 167 67.1
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 6.5e-46 189.9 143 71.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 6.5e-46 189.9 143 71.3
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 6.1e-36 156.8 130 66.9
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 2.4e-32 144.8 100 74.0
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.6e-28 132.1 115 57.4
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.3e-25 122.5 84 69.0
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 2.0e-18 98.6 196 37.2
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.2e-15 89.4 64 68.8
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 7.7e-15 86.7 143 38.5
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 2.1e-12 78.6 63 66.7


User provided reference genes

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