Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1856.3 927 100.0
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1845.9 927 99.6
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1845.9 927 99.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1768.8 941 93.2
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1715.3 937 91.9
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1688.7 939 89.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1641.7 942 88.2
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1619.4 937 87.2
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1619.4 938 85.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1618.2 938 86.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1617.1 938 87.3
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1610.9 938 85.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1602.8 938 85.3
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1582.4 930 86.7
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1582.4 930 86.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1444.1 936 78.2
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1333.2 921 73.0
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1253.0 755 83.0
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1202.2 941 64.8
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 932 65.5
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1188.7 932 66.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1187.9 938 64.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1179.1 935 64.8
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1176.8 932 64.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1169.8 954 63.6
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1169.8 942 63.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 932 64.6
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1166.8 930 64.3
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 932 64.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 931 64.3
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1165.6 988 61.5
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1163.3 940 63.7
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 948 62.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 930 64.0
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 951 63.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1143.6 944 62.2
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1139.8 916 63.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1139.4 958 61.7
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 957 62.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 923 63.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 945 62.6
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 918 63.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 941 62.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 943 63.4
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1130.5 946 61.7
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 921 63.0
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1126.7 914 64.1
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 948 61.6
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 934 62.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 957 61.4
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1123.6 920 63.2
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 975 60.3
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 938 61.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 937 62.3
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 935 60.9
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 948 59.7
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1108.2 936 62.1
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1106.3 1014 58.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1106.3 928 61.3
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 947 60.9
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 1014 58.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 948 59.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1097.0 941 61.6
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 1014 57.9
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 946 61.7
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1095.5 928 61.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 944 60.9
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 1009 57.5
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 1010 57.3
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 851 65.5
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 935 60.4
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 924 60.8
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1082.0 946 61.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 613 88.1
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 910 60.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 889 61.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 6.3e-312 1074.3 967 59.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.4e-309 1066.2 958 58.5
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 6.9e-309 1063.9 958 58.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 6.9e-309 1063.9 926 58.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.2e-308 1063.1 984 57.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.5e-308 1062.8 936 60.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.3e-307 1059.7 968 58.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 1.7e-307 1059.3 931 60.7
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.7e-307 1059.3 959 59.1
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.9e-306 1055.8 956 57.7
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.7e-305 1052.0 762 70.9
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 4.6e-305 1051.2 984 57.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 2.3e-304 1048.9 934 59.2
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 3.0e-304 1048.5 1034 55.9
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.1e-304 1047.7 919 60.1
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 8.8e-304 1047.0 981 56.7
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 3.7e-302 1041.6 938 58.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.5e-298 1028.9 919 58.9
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.1e-297 1025.8 1058 53.7
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.1e-296 1021.1 1068 52.2
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 7.4e-295 1017.3 825 63.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 4.8e-294 1014.6 889 60.5
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.4e-293 1012.3 938 57.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-293 1011.5 886 59.8
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 7.0e-293 1010.7 915 58.5
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 2.2e-291 1005.7 940 57.4
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.2e-290 1001.9 851 63.1
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.7e-286 988.4 928 56.4
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.0e-283 980.3 862 59.5
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-283 979.9 1058 51.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.7e-283 979.5 859 59.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 6.5e-283 977.6 1167 48.6
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 8.0e-281 970.7 927 56.4
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 6.8e-280 967.6 953 54.1
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.4e-277 959.1 932 54.9
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 7.0e-277 957.6 958 55.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.7e-275 953.0 817 60.5
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.5e-275 951.0 957 54.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.3e-248 862.8 908 51.2
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.7e-246 855.5 974 47.2
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.1e-245 852.0 885 51.2
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 7.6e-239 831.2 952 49.5
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.4e-237 825.1 841 52.0
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.2e-236 823.9 1081 43.3
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.6e-235 818.1 680 63.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.1e-205 721.1 720 53.9
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.8e-187 660.6 641 56.5
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.4e-184 650.2 408 77.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.3e-184 649.0 669 54.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.1e-165 588.2 761 46.0
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 2.1e-156 557.4 399 71.2
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.7e-156 556.2 357 75.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-154 551.6 403 68.5
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 7.3e-133 479.2 476 56.1
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.6e-124 451.4 286 74.8
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.8e-123 446.0 296 73.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.2e-116 425.2 286 72.7
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.2e-116 422.9 559 44.7
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 5.2e-115 419.9 571 46.4
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.4e-112 409.8 717 37.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.0e-102 379.0 474 47.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.3e-102 377.9 271 64.9
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 2.8e-100 370.9 326 56.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-93 349.0 212 78.8
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 6.3e-76 290.0 167 89.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.6e-74 284.6 146 95.2
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.7e-52 211.1 139 67.6
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.8e-46 192.2 212 48.1
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 7.7e-42 176.8 135 65.2
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.1e-32 146.4 110 66.4
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 6.8e-30 137.1 162 44.4
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.7e-28 131.3 111 52.3
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.7e-28 131.3 76 80.3
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 5.0e-25 120.9 160 45.0
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.5e-24 116.7 86 61.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-19 103.2 66 72.7
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.4e-19 100.9 283 33.6
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 5.0e-17 94.4 144 42.4
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 5.0e-17 94.4 279 31.2
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.6e-15 89.4 61 68.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.7e-15 87.8 57 75.4
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.0e-14 84.7 82 52.4
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.2e-12 79.0 56 64.3
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.2e-12 79.0 56 64.3
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.1e-11 76.6 66 48.5
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.2e-11 75.1 56 62.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.1e-09 67.8 51 60.8
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.3e-08 65.1 68 50.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.3e-08 65.1 62 50.0
BcaB04g18222 Brassica carinata HOM05D010251 ORTHO05D090319 4.3e-08 64.7 87 41.4
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 6.2e-07 60.8 33 72.7
C05p49240 Brassica napus HOM05D019709 ORTHO05D001800 1.1e-06 60.1 46 67.4
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.4e-06 59.7 76 43.4
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.8e-06 59.3 52 53.8


User provided reference genes

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