Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p29150 Brassica napus HOM05D000625 ORTHO05D000467 5.4e-148 527.7 280 100.0
BcaC05g27057 Brassica carinata HOM05D000625 ORTHO05D000467 1.1e-121 440.3 293 84.3
BolC5t31645H Brassica oleracea HOM05D000625 ORTHO05D000467 9.3e-116 420.6 342 72.5
A09p36210 Brassica napus HOM05D000625 ORTHO05D000467 1.3e-101 373.6 419 57.5
BraA09t39148Z Brassica rapa HOM05D000625 ORTHO05D000467 1.1e-100 370.5 421 57.2
BcaB07g32627 Brassica carinata HOM05D000625 ORTHO05D000467 1.4e-90 337.0 420 50.2
Carub.0001s2851 Capsella rubella HOM05D000625 ORTHO05D000467 1.2e-83 313.9 448 46.9
Sp1g26120 Schrenkiella parvula HOM05D000625 ORTHO05D000467 6.1e-83 311.6 440 48.2
BcaB03g12207 Brassica carinata HOM05D000625 ORTHO05D000467 2.3e-82 309.7 428 48.4
BcaB07g32634 Brassica carinata HOM05D000625 ORTHO05D000467 3.9e-82 308.9 432 48.6
AL1G44230 Arabidopsis lyrata HOM05D000625 ORTHO05D000467 2.0e-81 306.6 442 46.2
AT1G30280 Arabidopsis thaliana HOM05D000625 ORTHO05D000467 2.0e-81 306.6 442 45.9
Thhalv10007605m.g Eutrema salsugineum HOM05D000625 ORTHO05D000467 2.2e-80 303.1 439 46.0
CARHR029670 Cardamine hirsuta HOM05D000625 ORTHO05D000467 1.1e-79 300.8 436 45.6
BcaB03g13837 Brassica carinata HOM05D000625 ORTHO05D000467 1.4e-79 300.4 431 46.9
BraA08t34410Z Brassica rapa HOM05D000625 ORTHO05D000467 4.1e-79 298.9 416 47.6
A07p09990 Brassica napus HOM05D000625 ORTHO05D000467 7.0e-79 298.1 422 47.2
A08p24540 Brassica napus HOM05D000625 ORTHO05D000467 9.1e-79 297.7 415 46.7
BraA07t28791Z Brassica rapa HOM05D000625 ORTHO05D000467 1.3e-77 293.9 422 46.0
C03p76620 Brassica napus HOM05D000625 ORTHO05D000467 4.2e-76 288.9 427 45.2
BcaC01g00181 Brassica carinata HOM05D000625 ORTHO05D000467 7.2e-76 288.1 427 45.4
BolC3t19921H Brassica oleracea HOM05D000625 ORTHO05D000467 7.2e-76 288.1 427 45.4
BcaC06g35499 Brassica carinata HOM05D000625 ORTHO05D000467 2.7e-75 286.2 417 47.2
BolC7t42030H Brassica oleracea HOM05D000625 ORTHO05D000467 8.0e-75 284.6 417 47.0
C07p15270 Brassica napus HOM05D000625 ORTHO05D000467 3.9e-74 282.3 417 46.8
Aa31LG6G5480 Aethionema arabicum HOM05D000625 ORTHO05D000467 2.8e-64 249.6 449 41.0
THA.LOC104820660 Tarenaya hassleriana HOM05D000625 ORTHO05D000467 1.5e-41 174.1 474 34.4
Manes.15G124900 Manihot esculenta HOM05D000625 ORTHO05D000467 5.2e-26 122.5 432 28.9
Gohir.D05G148800 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.2e-25 121.3 489 27.8
Haze_05659 Corylus avellana HOM05D000625 ORTHO05D000467 3.4e-25 119.8 448 28.1
Lj2C322G11 Lonicera japonica HOM05D000625 ORTHO05D000467 3.4e-25 119.8 260 34.6
Cfa000902 Carpinus fangiana HOM05D000625 ORTHO05D000467 5.8e-25 119.0 447 27.7
Potri.011G081500 Populus trichocarpa HOM05D000625 ORTHO05D000467 9.9e-25 118.2 455 28.1
ClCG01G024870 Citrullus lanatus HOM05D000625 ORTHO05D000467 2.9e-24 116.7 444 27.9
Gorai.009G152900 Gossypium raimondii HOM05D000625 ORTHO05D000467 1.1e-23 114.8 489 26.8
Gohir.A05G146400 Gossypium hirsutum HOM05D000625 ORTHO05D000467 9.2e-23 111.7 486 27.0
COL.COLO4_31012 Corchorus olitorius HOM05D000625 ORTHO05D000467 2.7e-22 110.2 117 51.3
GSVIVG01021545001 Vitis vinifera HOM05D000625 ORTHO05D000467 6.0e-22 109.0 451 26.8
Duzib235G0761 Durio zibethinus HOM05D000625 ORTHO05D000467 7.8e-22 108.6 464 26.7
Hma1.2p1_0594F.1_g185990 Hydrangea macrophylla HOM05D000625 ORTHO05D000467 1.0e-21 108.2 440 28.2
Ciclev10015036m.g Citrus clementina HOM05D000625 ORTHO05D000467 1.7e-21 107.5 453 27.2
Manes.17G074100 Manihot esculenta HOM05D000625 ORTHO05D000467 1.7e-21 107.5 439 28.7
Nn3g20338 Nelumbo nucifera HOM05D000625 ORTHO05D000467 3.9e-21 106.3 482 25.7
Gorai.010G237600 Gossypium raimondii HOM05D000625 ORTHO05D000467 6.6e-21 105.5 396 26.5
TWI73G1040 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 6.6e-21 105.5 454 26.4
Dinv32215 Davidia involucrata HOM05D000625 ORTHO05D000467 1.5e-20 104.4 451 27.1
Sabra11G0065200 Salix brachista HOM05D000625 ORTHO05D000467 1.5e-20 104.4 112 50.9
Thecc.06G144600 Theobroma cacao HOM05D000625 ORTHO05D000467 1.5e-20 104.4 457 27.8
Dinv21525 Davidia involucrata HOM05D000625 ORTHO05D000467 4.3e-20 102.8 453 26.3
Eucgr.D00271 Eucalyptus grandis HOM05D000625 ORTHO05D000467 5.6e-20 102.4 473 25.8
Sabra04G0085000 Salix brachista HOM05D000625 ORTHO05D000467 9.6e-20 101.7 426 26.1
VMungo1309G1421 Vigna mungo HOM05D000625 ORTHO05D000467 9.6e-20 101.7 432 27.1
Gohir.D06G203700 Gossypium hirsutum HOM05D000625 ORTHO05D000467 1.6e-19 100.9 407 25.6
Phvul.009G213200 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 2.8e-19 100.1 430 27.0
MELO3C007108.2 Cucumis melo HOM05D000625 ORTHO05D000467 3.6e-19 99.8 113 48.7
Duzib192G0574 Durio zibethinus HOM05D000625 ORTHO05D000467 3.6e-19 99.8 490 25.5
arahy.Tifrunner.gnm1.ann1.G0QL0C Arachis hypogaea HOM05D000625 ORTHO05D000467 4.7e-19 99.4 435 24.6
Glyma.15G197100 Glycine max HOM05D000625 ORTHO05D000467 4.7e-19 99.4 438 26.9
Medtr2g049770 Medicago truncatula HOM05D000625 ORTHO05D000467 6.2e-19 99.0 428 26.4
arahy.Tifrunner.gnm1.ann1.W5QJNA Arachis hypogaea HOM05D000625 ORTHO05D000467 8.1e-19 98.6 439 24.8
Duzib160G0084 Durio zibethinus HOM05D000625 ORTHO05D000467 1.1e-18 98.2 117 47.0
Rhsim13G0117200 Rhododendron simsii HOM05D000625 ORTHO05D000467 1.4e-18 97.8 437 26.3
TWI09G0936 Tripterygium wilfordii HOM05D000625 ORTHO05D000467 1.8e-18 97.4 452 25.9
TAR629G2522 Trochodendron aralioides HOM05D000625 ORTHO05D000467 1.8e-18 97.4 470 25.5
CsaV3_6G051990 Cucumis sativus L. HOM05D000625 ORTHO05D000467 2.4e-18 97.1 112 48.2
TAR704G0001 Trochodendron aralioides HOM05D000625 ORTHO05D000467 2.4e-18 97.1 475 24.4
MSTRG.14786 Avicennia marina HOM05D000625 ORTHO05D000467 4.0e-18 96.3 443 25.3
vmacro03434 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 8.9e-18 95.1 483 26.1
SalBow8G3181 Salvia bowleyana HOM05D000625 ORTHO05D000467 1.2e-17 94.7 427 24.8
Cpa.g.sc17.48 Carica papaya HOM05D000625 ORTHO05D000467 1.5e-17 94.4 454 23.6
ClCG03G006510 Citrullus lanatus HOM05D000625 ORTHO05D000467 1.5e-17 94.4 433 25.6
Sed0014179 Sechium edule HOM05D000625 ORTHO05D000467 2.0e-17 94.0 116 45.7
Sed0027919 Sechium edule HOM05D000625 ORTHO05D000467 2.0e-17 94.0 425 24.9
Ca_02598_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 3.4e-17 93.2 408 27.5
Glyma.09G089500 Glycine max HOM05D000625 ORTHO05D000467 3.4e-17 93.2 436 26.1
Nn4g26634 Nelumbo nucifera HOM05D000625 ORTHO05D000467 3.4e-17 93.2 440 26.4
Prupe.4G085400 Prunus persica HOM05D000625 ORTHO05D000467 3.4e-17 93.2 467 25.1
Lalb_Chr23g0275921 Lupinus albus HOM05D000625 ORTHO05D000467 4.4e-17 92.8 426 26.1
Actinidia13444 Actinidia chinensis HOM05D000625 ORTHO05D000467 9.9e-17 91.7 438 26.0
MD10G1258400 Malus domestica HOM05D000625 ORTHO05D000467 9.9e-17 91.7 463 24.4
QL05p055155 Quercus lobata HOM05D000625 ORTHO05D000467 1.7e-16 90.9 464 24.8
PGR083G0357 Punica granatum HOM05D000625 ORTHO05D000467 2.9e-16 90.1 439 26.0
FvH4_3g05060 Fragaria vesca HOM05D000625 ORTHO05D000467 6.4e-16 89.0 454 24.2
MSTRG.7510 Avicennia marina HOM05D000625 ORTHO05D000467 8.4e-16 88.6 448 25.4
FAN16G3061 Fragaria x ananassa HOM05D000625 ORTHO05D000467 1.4e-15 87.8 460 24.1
CiPaw.09G119900 Carya illinoinensis HOM05D000625 ORTHO05D000467 1.9e-15 87.4 416 24.8
Actinidia07465 Actinidia chinensis HOM05D000625 ORTHO05D000467 2.4e-15 87.0 438 24.7
FAN25G3819 Fragaria x ananassa HOM05D000625 ORTHO05D000467 2.4e-15 87.0 500 23.6
Atru.chr10.1090 Acer truncatum HOM05D000625 ORTHO05D000467 3.2e-15 86.7 135 42.2
Lj6g0026443 Lotus japonicus HOM05D000625 ORTHO05D000467 3.2e-15 86.7 447 24.2
MSTRG.16264 Avicennia marina HOM05D000625 ORTHO05D000467 5.4e-15 85.9 457 23.9
Sc17g0004800 Simmondsia chinensis HOM05D000625 ORTHO05D000467 5.4e-15 85.9 470 24.9
SalBow7G2185 Salvia bowleyana HOM05D000625 ORTHO05D000467 7.1e-15 85.5 151 39.1
SalBow7G4302 Salvia bowleyana HOM05D000625 ORTHO05D000467 7.1e-15 85.5 151 39.1
FAN11G1753 Fragaria x ananassa HOM05D000625 ORTHO05D000467 9.3e-15 85.1 144 40.3
MD05G1279900 Malus domestica HOM05D000625 ORTHO05D000467 1.2e-14 84.7 470 24.7
Ca_18161_v3 Cicer arietinum L. HOM05D000625 ORTHO05D000467 1.6e-14 84.3 145 40.0
CANSAT35G1452 Cannabis sativa HOM05D000625 ORTHO05D000467 2.1e-14 84.0 112 48.2
FAN21G0939 Fragaria x ananassa HOM05D000625 ORTHO05D000467 2.1e-14 84.0 469 23.2
Sed0010534 Sechium edule HOM05D000625 ORTHO05D000467 2.1e-14 84.0 438 24.7
MELO3C002769.2 Cucumis melo HOM05D000625 ORTHO05D000467 2.7e-14 83.6 439 25.3
TAR626G1770 Trochodendron aralioides HOM05D000625 ORTHO05D000467 6.0e-14 82.4 131 40.5
Migut.M00882 Erythranthe guttata HOM05D000625 ORTHO05D000467 1.0e-13 81.6 455 24.2
MBI18_g11222_MAGBIO Magnolia biondii HOM05D000625 ORTHO05D000467 1.0e-13 81.6 146 41.8
Psat1g020720 Pisum sativum HOM05D000625 ORTHO05D000467 1.0e-13 81.6 425 25.2
arahy.Tifrunner.gnm1.ann1.J3VXKJ Arachis hypogaea HOM05D000625 ORTHO05D000467 1.7e-13 80.9 454 24.7
HPP92_028168 Vanilla planifolia HOM05D005567 ORTHO05D005651 1.7e-13 80.9 160 37.5
arahy.Tifrunner.gnm1.ann1.FF7LJT Arachis hypogaea HOM05D000625 ORTHO05D000467 2.3e-13 80.5 454 24.7
arahy.Tifrunner.gnm1.ann1.RJ5V20 Arachis hypogaea HOM05D000625 ORTHO05D000467 2.3e-13 80.5 454 24.7
Medtr8g079472 Medicago truncatula HOM05D000625 ORTHO05D000467 5.1e-13 79.3 142 39.4
EL10Ac8g19628 Beta vulgaris HOM05D000625 ORTHO05D000467 8.7e-13 78.6 91 47.3
AUR62030136 Chenopodium quinoa HOM05D000625 ORTHO05D000467 8.7e-13 78.6 91 46.2
Lj4g0003152 Lotus japonicus HOM05D000625 ORTHO05D000467 8.7e-13 78.6 170 37.6
AUR62002681 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.1e-12 78.2 91 45.1
Glyma.08G099600 Glycine max HOM05D000625 ORTHO05D000467 1.5e-12 77.8 391 25.6
CsaV3_1G036840 Cucumis sativus L. HOM05D000625 ORTHO05D000467 2.5e-12 77.0 165 35.2
Oeu030961.1 Olea europaea HOM05D000625 ORTHO05D000467 2.5e-12 77.0 168 36.3
CDE02G0202 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 4.3e-12 76.3 111 42.3
Lalb_Chr07g0187501 Lupinus albus HOM05D000625 ORTHO05D000467 4.3e-12 76.3 418 23.4
TPR.G31226 Trifolium pratense HOM05D000625 ORTHO05D000467 4.3e-12 76.3 431 23.7
Gohir.A06G196200 Gossypium hirsutum HOM05D000625 ORTHO05D000467 5.6e-12 75.9 384 23.2
Nitab4.5_0001930g0030 Nicotiana tabacum HOM05D000625 ORTHO05D000467 5.6e-12 75.9 132 41.7
Cc03_g08810 Coffea canephora HOM05D000625 ORTHO05D000467 7.3e-12 75.5 454 23.1
TPR.G9564 Trifolium pratense HOM05D000625 ORTHO05D000467 7.3e-12 75.5 141 39.7
Lsat_1_v5_gn_7_27500 Lactuca sativa HOM05D000625 ORTHO05D000467 1.6e-11 74.3 469 24.5
Glyma.05G143200 Glycine max HOM05D000625 ORTHO05D000467 2.8e-11 73.6 434 26.0
VMungo0251G1602 Vigna mungo HOM05D000625 ORTHO05D000467 4.8e-11 72.8 396 24.5
Peaxi162Scf00465g00819 Petunia axillaris HOM05D000625 ORTHO05D000467 6.2e-11 72.4 250 27.2
RcHm_v2.0_Chr5g0014901 Rosa chinensis HOM05D000625 ORTHO05D000467 8.1e-11 72.0 424 23.8
ECA236G4706 Erigeron canadensis HOM05D000625 ORTHO05D000467 1.4e-10 71.2 441 23.4
Nitab4.5_0004752g0010 Nicotiana tabacum HOM05D000625 ORTHO05D000467 1.8e-10 70.9 144 37.5
HanXRQChr04g0116591 Helianthus annuus HOM05D000625 ORTHO05D000467 3.1e-10 70.1 452 24.1
Aqoxy1G01660 Aquilegia oxysepala HOM05D000625 ORTHO05D000467 1.5e-09 67.8 175 32.0
CDE05G1731 Ceratophyllum demersum HOM05D000625 ORTHO05D000467 2.6e-09 67.0 119 37.8
Migut.H01348 Erythranthe guttata HOM05D000625 ORTHO05D000467 2.6e-09 67.0 97 40.2
Lj5g0018160 Lotus japonicus HOM05D000625 ORTHO05D000467 3.4e-09 66.6 48 62.5
Glyma.08G231500 Glycine max HOM05D000625 ORTHO05D000467 5.8e-09 65.9 391 24.8
unitig_37.g12090 Utricularia gibba HOM05D000625 ORTHO05D000467 7.6e-09 65.5 155 31.0
DCAR_004817 Daucus carota HOM05D000625 ORTHO05D000467 9.9e-09 65.1 409 24.0
SGA_v2.0_scaffold106G30658 Striga asiatica HOM05D000625 ORTHO05D000467 2.9e-08 63.5 177 31.1
SGA_v2.0_scaffold223G42823 Striga asiatica HOM05D000625 ORTHO05D000467 4.9e-08 62.8 132 35.6
Haze_05667 Corylus avellana HOM05D000625 ORTHO05D000467 6.4e-08 62.4 79 44.3
PSO541G5001 Papaver somniferum HOM05D000625 ORTHO05D000467 6.4e-08 62.4 168 28.6
PSO675G7500 Papaver somniferum HOM05D000625 ORTHO05D000467 1.1e-07 61.6 176 27.8
Hund21551 Selenicereus undatus HOM05D000625 ORTHO05D000467 1.1e-07 61.6 183 32.8
Phvul.002G178100 Phaseolus vulgaris HOM05D000625 ORTHO05D000467 1.4e-07 61.2 400 22.8
DCAR_003894 Daucus carota HOM05D000625 ORTHO05D000467 3.2e-07 60.1 101 39.6
Rhsim06G0035600 Rhododendron simsii HOM05D000625 ORTHO05D000467 2.1e-06 57.4 76 42.1
Psat7g080520 Pisum sativum HOM05D000625 ORTHO05D000467 4.6e-06 56.2 127 37.8
Potri.002G134300 Populus trichocarpa HOM05D000625 ORTHO05D000467 6.0e-06 55.8 66 43.9
VMungo1309G2141 Vigna mungo HOM05D000625 ORTHO05D000467 6.0e-06 55.8 76 39.5
Ah.11g043260 Amaranthus hybridus HOM05D000625 ORTHO05D000467 7.9e-06 55.5 66 40.9
ATR1098G052 Amborella trichopoda HOM05D000625 ORTHO05D000467 7.9e-06 55.5 52 53.8
BcaB02g06992 Brassica carinata HOM05D000625 ORTHO05D000467 7.9e-06 55.5 67 41.8
Carub.0002s2188 Capsella rubella HOM05D000625 ORTHO05D000467 7.9e-06 55.5 57 45.6


User provided reference genes

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